RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 KBTBD2Q8IY47 623 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 GANCQ8TET4 914 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 SELENOMQ8WWX9 145 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 TEX37Q96LM6 180 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 PTBP2Q9UKA9 531 aaKnown RBP13.39□□□□□ -0.27
CLK3-203ENST00000454830 LRRC42Q9Y546 428 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 AK5Q9Y6K8 562 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 PRORSD1PA6NEY8 169 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 FTH1P02794 183 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 UBTFL6P0CB48 400 aaPredicted RBP13.38□□□□□ -0.27
CLK3-203ENST00000454830 G6PDP11413 515 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 ACADVLP49748 655 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 POLR2JP52435 117 aaKnown RBP13.38□□□□□ -0.27
CLK3-203ENST00000454830 PTCHD3Q3KNS1 767 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 SFRP1Q8N474 314 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 PDPRQ8NCN5 879 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 UCMAQ8WVF2 138 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 ZBTB18Q99592 522 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 SEMA6AQ9H2E6 1030 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 TMPRSS11EQ9UL52 423 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 SLC22A14Q9Y267 594 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 CHD9Q3L8U1 2897 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 CTSCP53634 463 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 TRIM25Q14258 630 aaKnown RBP13.38□□□□□ -0.27
CLK3-203ENST00000454830 TANGO2Q6ICL3 276 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 CRTC3Q6UUV7 619 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 LIPIQ6XZB0 460 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 LILRA3Q8N6C8 439 aaPredicted RBP13.38□□□□□ -0.27
CLK3-203ENST00000454830 ASB16Q96NS5 453 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 TMEM79Q9BSE2 394 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 ZSCAN5AQ9BUG6 496 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 SFXN1Q9H9B4 322 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 PARVBQ9HBI1 364 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 SDR39U1Q9NRG7 319 aaPredicted RBP13.38□□□□□ -0.27
CLK3-203ENST00000454830 MARK1Q9P0L2 795 aa13.38□□□□□ -0.27
CLK3-203ENST00000454830 TMEM202A6NGA9 273 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 FADS2P1A8MWK0 482 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 C5orf67F2Z3F1 127 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 RGS14O43566 566 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 GRIA3P42263 894 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 DGKQP52824 942 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 TRAF3Q13114 568 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 PRKG2Q13237 762 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 Q6ZSR9 355 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 PLCD3Q8N3E9 789 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 KXD1Q9BQD3 176 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 KLHL4Q9C0H6 718 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 EIF3LQ9Y262 564 aaKnown RBP13.37□□□□□ -0.27
CLK3-203ENST00000454830 MTCL1Q9Y4B5 1905 aaKnown RBP13.37□□□□□ -0.27
CLK3-203ENST00000454830 ZNF839A8K0R7 811 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 KRT6AP02538 564 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 KRT6BP04259 564 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 AOAHP28039 575 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 KRT6CP48668 564 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 ATP4BP51164 291 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 DHFR2Q86XF0 187 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 PQLC1Q8N2U9 271 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 STON2Q8WXE9 905 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 PBX4Q9BYU1 374 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 OR2AG1Q9H205 316 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 AIG1Q9NVV5 245 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 PPIL1Q9Y3C6 166 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 CLDN9O95484 217 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 SRPRAP08240 638 aaKnown RBP13.37□□□□□ -0.27
CLK3-203ENST00000454830 ZNF234Q14588 700 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 RFTN2Q52LD8 501 aaPredicted RBP13.37□□□□□ -0.27
CLK3-203ENST00000454830 KBTBD6Q86V97 674 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 PHYKPLQ8IUZ5 450 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 CHPFQ8IZ52 775 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 GLYATL1Q969I3 302 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 PPP2R3CQ969Q6 453 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 ECSITQ9BQ95 431 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 C1QTNF3Q9BXJ4 246 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 PSMD13Q9UNM6 376 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 DTNAQ9Y4J8 743 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 SNX13Q9Y5W8 968 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 GPR45Q9Y5Y3 372 aa13.37□□□□□ -0.27
CLK3-203ENST00000454830 PCDH8O95206 1070 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 CISD3P0C7P0 127 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 KLC1Q07866 573 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 TMEM115Q12893 351 aaPredicted RBP13.36□□□□□ -0.27
CLK3-203ENST00000454830 CDC16Q13042 620 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 PTGR1Q14914 329 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 PDE12Q6L8Q7 609 aaKnown RBP13.36□□□□□ -0.27
CLK3-203ENST00000454830 ISLR2Q6UXK2 745 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 TRMT11Q7Z4G4 463 aaKnown RBP13.36□□□□□ -0.27
CLK3-203ENST00000454830 ICA1LQ8NDH6 482 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 PPM1MQ96MI6 270 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 FOPNLQ96NB1 174 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 LRCH1Q9Y2L9 728 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 NUMA1Q14980 2115 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 BBIP1A8MTZ0 92 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 ATG13O75143 517 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 RECQL5O94762 991 aaPredicted RBP13.36□□□□□ -0.27
CLK3-203ENST00000454830 CBSLP0DN79 551 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 CBSP35520 551 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 RABL3Q5HYI8 236 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 CYP20A1Q6UW02 462 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 CFAP206Q8IYR0 622 aa13.36□□□□□ -0.27
CLK3-203ENST00000454830 TRAM1L1Q8N609 369 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms