RNA–Protein interactions for RNA: ENST00000448940.5

CDC42BPA-209, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 7,355 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-209ENST00000448940 DDX3XO00571 662 aaKnown RBP eCLIP5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 PMM2O15305 246 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 SLC16A5O15375 505 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 PHF2O75151 1096 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 SHMT2P34897 504 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 RPS9P46781 194 aaKnown RBP5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 MCCD1P59942 119 aaPredicted RBP5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 MGAT5Q09328 741 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 SERINC3Q13530 473 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 ZNF77Q15935 545 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 KCT2Q8NC54 265 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 CHDHQ8NE62 594 aaPredicted RBP5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 TFGQ92734 400 aaPredicted RBP5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 MUCL1Q96DR8 90 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 LGR4Q9BXB1 951 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 PHACTR1Q9C0D0 580 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 ROGDIQ9GZN7 287 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 RNF38Q9H0F5 515 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 POLR1BQ9H9Y6 1135 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 MRPS30Q9NP92 439 aaKnown RBP5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 TAF1LQ8IZX4 1826 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 NUP205Q92621 2012 aa5.54□□□□□ -1.52
CDC42BPA-209ENST00000448940 ANKRD36CQ5JPF3 1778 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 OTOGLQ3ZCN5 2332 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 ARFGEF1Q9Y6D6 1849 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 CLOCKO15516 846 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 PEX1O43933 1283 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 SNX4O95219 450 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 LRATO95237 230 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 TSPAN12O95859 305 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 CCNG1P51959 295 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 ATXN1P54253 815 aaKnown RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 EIF3IQ13347 325 aaKnown RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 COL9A2Q14055 689 aaPredicted RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 C6orf10Q5SRN2 563 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 DUPD1Q68J44 220 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 SPATS2Q86XZ4 545 aaKnown RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 BCL7CQ8WUZ0 217 aaPredicted RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 P2RY11Q96G91 374 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 ZSWIM3Q96MP5 696 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 VCX3BQ9H321 246 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 RMI1Q9H9A7 625 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 TMEM248Q9NWD8 314 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 POLEQ07864 2286 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 COL5A3P25940 1745 aaPredicted RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 TULP2O00295 520 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 ADAMTS3O15072 1205 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 SMAD7O15105 426 aaKnown RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 RFPL1O75677 317 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 PDE9AO76083 593 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 CYP1A2P05177 515 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 ITIH2P19823 946 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 EIF2S3P41091 472 aaKnown RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 PRKCIP41743 596 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 GALK2Q01415 458 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 ALDH6A1Q02252 535 aaKnown RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 NSDHLQ15738 373 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 LRRC66Q68CR7 880 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 TRIM40Q6P9F5 258 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 ADAMTSL2Q86TH1 951 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 ZNF100Q8IYN0 542 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 SH2D3CQ8N5H7 860 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 DENND6BQ8NEG7 585 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 OR2I1PQ8NGU4 316 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 HDAC10Q969S8 669 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 RPP25Q9BUL9 199 aaKnown RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 APOOQ9BUR5 198 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 XYLT2Q9H1B5 865 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 MCM8Q9UJA3 840 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 GPR179Q6PRD1 2367 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 KIR2DS5A0A0G2JLQ3 304 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 A0A0G2JNG1 304 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 KIR2DS3K7RE56 304 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 SUPT7LO94864 414 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 CAPZA1P52907 286 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 ACSM2AQ08AH3 577 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 INPP5AQ14642 412 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 KIR2DS5Q14953 304 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 AGAP7PQ5VUJ5 663 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 ACSM2BQ68CK6 577 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 PACS2Q86VP3 889 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 APCDD1Q8J025 514 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 CAMKVQ8NCB2 501 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 STYXQ8WUJ0 223 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 LINGO1Q96FE5 620 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 ARL5BQ96KC2 179 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 AGAP4Q96P64 663 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 NPY6RQ99463 290 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 TMEM245Q9H330 911 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 EPHA6Q9UF33 1036 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 BTRCQ9Y297 605 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 COL11A2P13942 1736 aaPredicted RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 CCDC163A0A0D9SF12 145 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 SERTM1A2A2V5 107 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 OR6C74A6NCV1 312 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 EPOPA6NHQ4 379 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 METTL12A8MUP2 240 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 TRAFD1O14545 582 aaPredicted RBP5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 PI15O43692 258 aa5.53□□□□□ -1.52
CDC42BPA-209ENST00000448940 SGTAO43765 313 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms