RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 RPE65Q16518 533 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 C6orf132Q5T0Z8 1188 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 CYHR1Q6ZMK1 362 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 DBX2Q6ZNG2 339 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 SPNS2Q8IVW8 549 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 NAGSQ8N159 534 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 EID2Q8N6I1 236 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 AVL9Q8NBF6 648 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 SPDYE1Q8NFV5 336 aaPredicted RBP15.42■□□□□ 0.06
USP40-206ENST00000443711 ACMSDQ8TDX5 336 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 TFGQ92734 400 aaPredicted RBP15.42■□□□□ 0.06
USP40-206ENST00000443711 CXorf40BQ96DE9 158 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 VPS11Q9H270 941 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 SCHIP1Q9P0W5 487 aaPredicted RBP15.42■□□□□ 0.06
USP40-206ENST00000443711 SIRPGQ9P1W8 387 aa15.42■□□□□ 0.06
USP40-206ENST00000443711 TSR3Q9UJK0 312 aaKnown RBP15.42■□□□□ 0.06
USP40-206ENST00000443711 ASCC3Q8N3C0 2202 aaKnown RBP15.41■□□□□ 0.06
USP40-206ENST00000443711 A0A1W2PPM1 405 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 GOLGA6L10A6NI86 522 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 C4orf47A7E2U8 309 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 TRIM38O00635 465 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 DYNC1I1O14576 645 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 FLRT2O43155 660 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 TSPAN12O95859 305 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 MYZAPP0CAP1 466 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 MTHFD1P11586 935 aaKnown RBP15.41■□□□□ 0.06
USP40-206ENST00000443711 COL6A2P12110 1019 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 XRCC1P18887 633 aaPredicted RBP15.41■□□□□ 0.06
USP40-206ENST00000443711 GRK6P43250 576 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 ATP6V0D1P61421 351 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 KRT33BQ14525 404 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 PPM1JQ5JR12 505 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 ZCCHC8Q6NZY4 707 aaKnown RBP15.41■□□□□ 0.06
USP40-206ENST00000443711 UNC5DQ6UXZ4 953 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 PIWIL4Q7Z3Z4 852 aaKnown RBP15.41■□□□□ 0.06
USP40-206ENST00000443711 SLC9B2Q86UD5 537 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 TRIM48Q8IWZ4 208 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 SFRP1Q8N474 314 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 CFAP61Q8NHU2 1237 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 MAPK15Q8TD08 544 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 ANKRD49Q8WVL7 239 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 PGM2Q96G03 612 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 UBXN10Q96LJ8 280 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 DERL2Q9GZP9 239 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 CENPHQ9H3R5 247 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 NMRAL1Q9HBL8 299 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 IMP3Q9NV31 184 aaKnown RBP15.41■□□□□ 0.06
USP40-206ENST00000443711 ZNF624Q9P2J8 865 aaPredicted RBP15.41■□□□□ 0.06
USP40-206ENST00000443711 COLEC10Q9Y6Z7 277 aa15.41■□□□□ 0.06
USP40-206ENST00000443711 FAM186AA6NE01 2351 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 OR52A4PA6NMU1 304 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 MAP2K7O14733 419 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 SIGLEC6O43699 453 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 NOBOXO60393 691 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 MATN4O95460 622 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 VIPP01282 170 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 RPN2P04844 631 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 LTA4HP09960 611 aaKnown RBP15.4■□□□□ 0.06
USP40-206ENST00000443711 CD59P13987 128 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 NDUFS1P28331 727 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 SLC19A1P41440 591 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 RPIAP49247 311 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 CSHL1Q14406 222 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 FAM83EQ2M2I3 478 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 C14orf28Q4W4Y0 310 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 TTC23LQ6PF05 361 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 C17orf82Q86X59 251 aaPredicted RBP15.4■□□□□ 0.06
USP40-206ENST00000443711 ARL10Q8N8L6 244 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 FAM181AQ8N9Y4 354 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 PHC3Q8NDX5 983 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 GPR156Q8NFN8 814 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 SETD7Q8WTS6 366 aaKnown RBP15.4■□□□□ 0.06
USP40-206ENST00000443711 PATE1Q8WXA2 126 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 ASB11Q8WXH4 323 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 PKNOX2Q96KN3 472 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 TSNARE1Q96NA8 513 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 FERD3LQ96RJ6 166 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 STMN4Q9H169 189 aaPredicted RBP15.4■□□□□ 0.06
USP40-206ENST00000443711 TRIT1Q9H3H1 467 aaKnown RBP15.4■□□□□ 0.06
USP40-206ENST00000443711 ACBD3Q9H3P7 528 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 STN1Q9H668 368 aaKnown RBP15.4■□□□□ 0.06
USP40-206ENST00000443711 MVB12BQ9H7P6 319 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 NCKIPSDQ9NZQ3 722 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 CPNE7Q9UBL6 633 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 ASF1AQ9Y294 204 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 CFAP20Q9Y6A4 193 aaKnown RBP15.4■□□□□ 0.06
USP40-206ENST00000443711 ANKRD12Q6UB98 2062 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 WDR87Q6ZQQ6 2873 aa15.4■□□□□ 0.06
USP40-206ENST00000443711 SLC16A5O15375 505 aa15.39■□□□□ 0.05
USP40-206ENST00000443711 GDF9O60383 454 aa15.39■□□□□ 0.05
USP40-206ENST00000443711 GFRA3O60609 400 aa15.39■□□□□ 0.05
USP40-206ENST00000443711 KLHL2O95198 593 aa15.39■□□□□ 0.05
USP40-206ENST00000443711 CATP04040 527 aaKnown RBP15.39■□□□□ 0.05
USP40-206ENST00000443711 C8GP07360 202 aa15.39■□□□□ 0.05
USP40-206ENST00000443711 PYGBP11216 843 aa15.39■□□□□ 0.05
USP40-206ENST00000443711 CD1DP15813 335 aa15.39■□□□□ 0.05
USP40-206ENST00000443711 CCNFP41002 786 aa15.39■□□□□ 0.05
USP40-206ENST00000443711 IRF9Q00978 393 aa15.39■□□□□ 0.05
USP40-206ENST00000443711 BIRC2Q13490 618 aa15.39■□□□□ 0.05
USP40-206ENST00000443711 STPG1Q5TH74 334 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms