RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 PACS1Q6VY07 963 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 Q6ZVL8 140 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 ZNF765Q7L2R6 523 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 TAS2R42Q7RTR8 314 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 SNX20Q7Z614 316 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 STRA8Q7Z7C7 330 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 C17orf82Q86X59 251 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-208ENST00000437607 NRROSQ86YC3 692 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 CILP2Q8IUL8 1156 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 C2CD4AQ8NCU7 369 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-208ENST00000437607 GPR26Q8NDV2 337 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 FAM46DQ8NEK8 389 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 USP7Q93009 1102 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 EID2BQ96D98 161 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 SGSM3Q96HU1 749 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 COQ10AQ96MF6 247 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 ZSCAN5AQ9BUG6 496 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 SPATA16Q9BXB7 569 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 FAM117AQ9C073 453 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 FAM83DQ9H4H8 585 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 SUDS3Q9H7L9 328 aaPredicted RBP11.94□□□□□ -0.5
PTPRF-208ENST00000437607 CTNNAL1Q9UBT7 734 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 CD84Q9UIB8 345 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 ZNF180Q9UJW8 692 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 FBXO5Q9UKT4 447 aa11.94□□□□□ -0.5
PTPRF-208ENST00000437607 CACNB4O00305 520 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-208ENST00000437607 TNFRSF10CO14798 259 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 NUDT21O43809 227 aaKnown RBP11.93□□□□□ -0.5
PTPRF-208ENST00000437607 CNTFP26441 200 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 SPRP35270 261 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-208ENST00000437607 TTPAP49638 278 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 CSRP3P50461 194 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 LIMK2P53671 638 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 XIAPP98170 497 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 PEX6Q13608 980 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 RASA2Q15283 850 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 CHRNA6Q15825 494 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 TBR1Q16650 682 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 TYSND1Q2T9J0 566 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 MANEAQ5SRI9 462 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 HENMT1Q5T8I9 393 aaKnown RBP11.93□□□□□ -0.5
PTPRF-208ENST00000437607 LGSNQ5TDP6 509 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 LYPLAL1Q5VWZ2 237 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 RAET1GQ6H3X3 334 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 CERS6Q6ZMG9 384 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 ZNF574Q6ZN55 896 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-208ENST00000437607 GALNT7Q86SF2 657 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 DENND6AQ8IWF6 608 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 TRAM1L1Q8N609 369 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 GPR150Q8NGU9 434 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 DCAKDQ8WVC6 231 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 PMEPA1Q969W9 287 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 TMEM159Q96B96 161 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 ZBTB9Q96C00 473 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 AP2M1Q96CW1 435 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 AGAP2Q99490 1192 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 RBBP8Q99708 897 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 DHRS4Q9BTZ2 278 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 CCDC68Q9H2F9 335 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 DPEP2Q9H4A9 486 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 RHOJQ9H4E5 214 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 ASB8Q9H765 288 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 RDH14Q9HBH5 336 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 CYP4F12Q9HCS2 524 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 IL26Q9NPH9 171 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 FBXO6Q9NRD1 293 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-208ENST00000437607 SPATS2LQ9NUQ6 558 aaKnown RBP11.93□□□□□ -0.5
PTPRF-208ENST00000437607 INTS10Q9NVR2 710 aaKnown RBP11.93□□□□□ -0.5
PTPRF-208ENST00000437607 MARCH4Q9P2E8 410 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-208ENST00000437607 TBK1Q9UHD2 729 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 IL17BQ9UHF5 180 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 LGALS13Q9UHV8 139 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 CORO1CQ9ULV4 474 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-208ENST00000437607 ST14Q9Y5Y6 855 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 PSAT1Q9Y617 370 aa11.93□□□□□ -0.5
PTPRF-208ENST00000437607 LRRK2Q5S007 2527 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 UBA6A0AVT1 1052 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-208ENST00000437607 PRSS38A1L453 326 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-208ENST00000437607 GAPDHSO14556 408 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-208ENST00000437607 GPR39O43194 453 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 SUV39H1O43463 412 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 UGT1A9O60656 530 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 NDUFS3O75489 264 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 PYGLP06737 847 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 CCL4P13236 92 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 KRT15P19012 456 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 GCAP28676 217 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 AKT1P31749 480 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 MAZP56270 477 aaKnown RBP11.92□□□□□ -0.5
PTPRF-208ENST00000437607 OR1D5P58170 312 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 CTBP1Q13363 440 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 BMPR2Q13873 1038 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 NR1D2Q14995 579 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 CLCA4Q14CN2 919 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 GPR33Q49SQ1 333 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 PHF19Q5T6S3 580 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 GRTP1Q5TC63 336 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 PNCKQ6P2M8 343 aa11.92□□□□□ -0.5
PTPRF-208ENST00000437607 ADGRD1Q6QNK2 874 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms