RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 H3BNX3 289 aa25.18■■□□□ 1.62
CPNE1-216ENST00000437340 KPNA3O00505 521 aaPredicted RBP25.18■■□□□ 1.62
CPNE1-216ENST00000437340 SGTAO43765 313 aa25.18■■□□□ 1.62
CPNE1-216ENST00000437340 CAPN3P20807 821 aa25.18■■□□□ 1.62
CPNE1-216ENST00000437340 HNMTP50135 292 aa25.18■■□□□ 1.62
CPNE1-216ENST00000437340 NME5P56597 212 aa25.18■■□□□ 1.62
CPNE1-216ENST00000437340 EMX2Q04743 252 aa25.18■■□□□ 1.62
CPNE1-216ENST00000437340 TRAP1Q12931 704 aaKnown RBP25.18■■□□□ 1.62
CPNE1-216ENST00000437340 TRIM25Q14258 630 aaKnown RBP25.18■■□□□ 1.62
CPNE1-216ENST00000437340 LRIT3Q3SXY7 679 aa25.18■■□□□ 1.62
CPNE1-216ENST00000437340 FNDC3BQ53EP0 1204 aaKnown RBP25.18■■□□□ 1.62
CPNE1-216ENST00000437340 RETREG3Q86VR2 466 aa25.18■■□□□ 1.62
CPNE1-216ENST00000437340 GPATCH1Q9BRR8 931 aaKnown RBP25.18■■□□□ 1.62
CPNE1-216ENST00000437340 TTYH1Q9H313 450 aaPredicted RBP25.18■■□□□ 1.62
CPNE1-216ENST00000437340 HEBP1Q9NRV9 189 aa25.18■■□□□ 1.62
CPNE1-216ENST00000437340 ARL15Q9NXU5 204 aa25.18■■□□□ 1.62
CPNE1-216ENST00000437340 FADS2P1A8MWK0 482 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 SYNCRIPO60506 623 aaKnown RBP25.17■■□□□ 1.62
CPNE1-216ENST00000437340 SLC22A3O75751 556 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 HIST1H2AGP0C0S8 130 aaPredicted RBP25.17■■□□□ 1.62
CPNE1-216ENST00000437340 HIST1H2ADP20671 130 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 ITGB7P26010 798 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 GDF5P43026 501 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 RCAN2Q14206 197 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 SMU1Q2TAY7 513 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 VPS26BQ4G0F5 336 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 SFRP1Q8N474 314 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 RNF148Q8N7C7 305 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 FNDC5Q8NAU1 212 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 ASZ1Q8WWH4 475 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 HIST1H2AHQ96KK5 128 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 ZNF184Q99676 751 aaPredicted RBP25.17■■□□□ 1.62
CPNE1-216ENST00000437340 HIST1H2AJQ99878 128 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 H2AFJQ9BTM1 129 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 VCX3BQ9H321 246 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 GID8Q9NWU2 228 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 MAP10Q9P2G4 905 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 EPS15L1Q9UBC2 864 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 CD300AQ9UGN4 299 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 PSMD13Q9UNM6 376 aa25.17■■□□□ 1.62
CPNE1-216ENST00000437340 A0A1W2PP18 115 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 OTOL1A6NHN0 477 aaPredicted RBP25.16■■□□□ 1.62
CPNE1-216ENST00000437340 GFYI3L273 518 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 HTR6P50406 440 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 FOXM1Q08050 763 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 MESP2Q0VG99 397 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 C9orf64Q5T6V5 341 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 RNF111Q6ZNA4 994 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 LRRC70Q7Z2Q7 622 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 CYP2U1Q7Z449 544 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 MINDY1Q8N5J2 469 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 GLYATL1Q969I3 302 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 SPDL1Q96EA4 605 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 PPP3R2Q96LZ3 170 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 SLC32A1Q9H598 525 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 C5orf42Q9H799 3197 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 DYTNA2CJ06 578 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 PABPN1LA6NDY0 278 aaKnown RBP25.16■■□□□ 1.62
CPNE1-216ENST00000437340 WNT9AO14904 365 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 MTX2O75431 263 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 CYP2A7P20853 494 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 AP1S2P56377 157 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 KCNK10P57789 538 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 ELP6Q0PNE2 266 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 ADAM15Q13444 863 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 BOP1Q14137 746 aaKnown RBP25.16■■□□□ 1.62
CPNE1-216ENST00000437340 ELAVL3Q14576 367 aaKnown RBP25.16■■□□□ 1.62
CPNE1-216ENST00000437340 ACOX1Q15067 660 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 POM121L1PQ3SYA9 428 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 SERPINA13PQ6UXR4 307 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 GET4Q7L5D6 327 aaPredicted RBP25.16■■□□□ 1.62
CPNE1-216ENST00000437340 BHLHE22Q8NFJ8 381 aaPredicted RBP25.16■■□□□ 1.62
CPNE1-216ENST00000437340 ELMO1Q92556 727 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 AP2M1Q96CW1 435 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 SLC29A3Q9BZD2 475 aa25.16■■□□□ 1.62
CPNE1-216ENST00000437340 C6orf203Q9P0P8 240 aaPredicted RBP25.16■■□□□ 1.62
CPNE1-216ENST00000437340 TRIOBPQ9H2D6 2365 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 DOCK8Q8NF50 2099 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 LSM1O15116 133 aaKnown RBP25.15■■□□□ 1.62
CPNE1-216ENST00000437340 SLCO2B1O94956 709 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 GRIN2CQ14957 1233 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 ABRAXAS2Q15018 415 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 SPATS1Q496A3 300 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 MBOAT1Q6ZNC8 495 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 RASGRP3Q8IV61 690 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 SKA2Q8WVK7 121 aaPredicted RBP25.15■■□□□ 1.62
CPNE1-216ENST00000437340 COQ10AQ96MF6 247 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 HPS4Q9NQG7 708 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 CLEC1BQ9P126 229 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 ABCD2Q9UBJ2 740 aa25.15■■□□□ 1.62
CPNE1-216ENST00000437340 SLC28A1O00337 649 aa25.14■■□□□ 1.62
CPNE1-216ENST00000437340 CASQ2O14958 399 aaPredicted RBP25.14■■□□□ 1.62
CPNE1-216ENST00000437340 FCARP24071 287 aa25.14■■□□□ 1.62
CPNE1-216ENST00000437340 NR6A1Q15406 480 aa25.14■■□□□ 1.62
CPNE1-216ENST00000437340 LAYNQ6UX15 382 aa25.14■■□□□ 1.62
CPNE1-216ENST00000437340 VRK3Q8IV63 474 aa25.14■■□□□ 1.62
CPNE1-216ENST00000437340 PIP4K2CQ8TBX8 421 aa25.14■■□□□ 1.62
CPNE1-216ENST00000437340 MCOLN3Q8TDD5 553 aa25.14■■□□□ 1.62
CPNE1-216ENST00000437340 DTD2Q96FN9 168 aa25.14■■□□□ 1.62
CPNE1-216ENST00000437340 PPP1R16AQ96I34 528 aa25.14■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms