RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 ILF2Q12905 390 aaKnown RBP22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 CUL1Q13616 776 aa22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 CNSTQ6PJW8 725 aa22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 PLXDC1Q8IUK5 500 aa22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 ACVR1CQ8NER5 493 aa22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 CDKL2Q92772 493 aa22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 KCNJ9Q92806 393 aa22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 TRIT1Q9H3H1 467 aaKnown RBP22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 POLG2Q9UHN1 485 aa22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 SLC24A2Q9UI40 661 aa22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 CDYLQ9Y232 598 aa22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 MAP1BP46821 2468 aaKnown RBP22.52■■□□□ 1.2
SMARCB1-205ENST00000417137 KDM1AO60341 852 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 SPAG6O75602 509 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 RPN2P04844 631 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 SSTR1P30872 391 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 CCKBRP32239 447 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 ZFP36L1Q07352 338 aaKnown RBP22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 TTLL9Q3SXZ7 439 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 UGT3A1Q6NUS8 523 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 DUS1LQ6P1R4 473 aaKnown RBP22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 CAPN12Q6ZSI9 719 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 SLC26A11Q86WA9 606 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 MARCH9Q86YJ5 346 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 TBC1D21Q8IYX1 336 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 ZBTB2Q8N680 514 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 PHC3Q8NDX5 983 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 C9orf72Q96LT7 481 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 NUDT22Q9BRQ3 303 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 AARSD1Q9BTE6 412 aaKnown RBP22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 NRSN2Q9GZP1 204 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 AKAP7Q9P0M2 348 aaPredicted RBP22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 CORO1CQ9ULV4 474 aaPredicted RBP22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 ENTPD2Q9Y5L3 495 aa22.51■■□□□ 1.19
SMARCB1-205ENST00000417137 RP1P56715 2156 aa22.5■■□□□ 1.19
SMARCB1-205ENST00000417137 VPS26AO75436 327 aa22.5■■□□□ 1.19
SMARCB1-205ENST00000417137 TYRP1P17643 537 aa22.5■■□□□ 1.19
SMARCB1-205ENST00000417137 LIMK2P53671 638 aa22.5■■□□□ 1.19
SMARCB1-205ENST00000417137 TRA2AQ13595 282 aaKnown RBP eCLIP22.5■■□□□ 1.19
SMARCB1-205ENST00000417137 PHF19Q5T6S3 580 aa22.5■■□□□ 1.19
SMARCB1-205ENST00000417137 ZNF549Q6P9A3 640 aa22.5■■□□□ 1.19
SMARCB1-205ENST00000417137 SKA2Q8WVK7 121 aaPredicted RBP22.5■■□□□ 1.19
SMARCB1-205ENST00000417137 FOPNLQ96NB1 174 aa22.5■■□□□ 1.19
SMARCB1-205ENST00000417137 FMO2Q99518 471 aa22.5■■□□□ 1.19
SMARCB1-205ENST00000417137 F7P08709 466 aaPredicted RBP22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 RHOXF2BP0C7M4 288 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 GABRB3P28472 473 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 ATP5DP30049 168 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 SKIV2L2P42285 1042 aaKnown RBP22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 ABRQ12979 859 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 EIF3IQ13347 325 aaKnown RBP22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 CAMK2BQ13554 666 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 TTC23LQ6PF05 361 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 UNC5DQ6UXZ4 953 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 VRK3Q8IV63 474 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 SLITRK4Q8IW52 837 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 OR5K2Q8NHB8 316 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 LCN9Q8WX39 176 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 INPP5DQ92835 1189 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 FAM136AQ96C01 138 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 ZDHHC12Q96GR4 267 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 ATXN7L3BQ96GX2 97 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 LIN37Q96GY3 246 aaPredicted RBP22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 RHOXF2Q9BQY4 288 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 SEMA6CQ9H3T2 930 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 TFB2MQ9H5Q4 396 aaKnown RBP22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 TAS2R13Q9NYV9 303 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 DHRS7Q9Y394 339 aa22.49■■□□□ 1.19
SMARCB1-205ENST00000417137 CCDC187A0A096LP49 1063 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 IGHV5-10-1A0A0J9YXX1 117 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 TRABD2BA6NFA1 517 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 HOXB3P14651 431 aaPredicted RBP22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 STX2P32856 288 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 CLCN7P51798 805 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 PDX1P52945 283 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 CFHR1Q03591 330 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 PRKG2Q13237 762 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 ARMC6Q6NXE6 501 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 ZNF574Q6ZN55 896 aaPredicted RBP22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 TMPRSS9Q7Z410 1059 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 STRA8Q7Z7C7 330 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 B3GNT8Q7Z7M8 397 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 CFAP61Q8NHU2 1237 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 WDR36Q8NI36 951 aaKnown RBP22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 CMKLR1Q99788 373 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 RAB33BQ9H082 229 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 SRMSQ9H3Y6 488 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 LRRC4CQ9HCJ2 640 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 OGFRQ9NZT2 677 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 PDP2Q9P2J9 529 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 TXNDC16Q9P2K2 825 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 EPHA6Q9UF33 1036 aa22.48■■□□□ 1.19
SMARCB1-205ENST00000417137 TCRBV9S1A1TA0A576 114 aa22.47■■□□□ 1.19
SMARCB1-205ENST00000417137 CBSLP0DN79 551 aa22.47■■□□□ 1.19
SMARCB1-205ENST00000417137 CSF2RBP32927 897 aa22.47■■□□□ 1.19
SMARCB1-205ENST00000417137 CBSP35520 551 aa22.47■■□□□ 1.19
SMARCB1-205ENST00000417137 CAPZBP47756 277 aa22.47■■□□□ 1.19
SMARCB1-205ENST00000417137 GPX6P59796 221 aa22.47■■□□□ 1.19
SMARCB1-205ENST00000417137 TUBB4BP68371 445 aa22.47■■□□□ 1.19
SMARCB1-205ENST00000417137 OOSP2Q86WS3 158 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms