RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 VNN3Q9NY84 501 aa13.15□□□□□ -0.31
CCDC88A-204ENST00000413716 OR12D3Q9UGF7 316 aa13.15□□□□□ -0.31
CCDC88A-204ENST00000413716 SFTPBP07988 381 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 NR2C1P13056 603 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 TSPAN8P19075 237 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 NDST1P52848 882 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ERI1Q8IV48 349 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 QTRT2Q9H974 415 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 RABL2BQ9UNT1 228 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF705FA8MVS1 300 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 KCNJ13O60928 360 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 MT-CO2P00403 227 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF286BP0CG31 522 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF705DP0CH99 300 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF705BP0CI00 300 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 CYP2B6P20813 491 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 LPOP22079 712 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ITPKAP23677 461 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 TARDBPQ13148 414 aaKnown RBP eCLIP13.14□□□□□ -0.314e-6■■■■□ 19.5
CCDC88A-204ENST00000413716 EIF2B1Q14232 305 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 FIGNQ5HY92 759 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 C12orf40Q86WS4 652 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 TMED9Q9BVK6 235 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 PLEKHM1Q9Y4G2 1056 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 TRAFD1O14545 582 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 LILRB5O75023 590 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 GTF2F2P13984 249 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 XKP51811 444 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 LAMTOR4Q0VGL1 99 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 GRIK2Q13002 908 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 DSG2Q14126 1118 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 NFE2L1Q14494 772 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 GRM3Q14832 879 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 LIN52Q52LA3 116 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 PRPF38BQ5VTL8 546 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 FCAMRQ8WWV6 532 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 RBM18Q96H35 190 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 SUPT20HL2P0C7V6 817 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 TSHRP16473 764 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 CYP11B2P19099 503 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 PRKAR1BP31321 381 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 CXCR3P49682 368 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 HEPACAMQ14CZ8 416 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ZER1Q7Z7L7 766 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 CREG2Q8IUH2 290 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 COX18Q8N8Q8 333 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ARRDC4Q8NCT1 418 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 OR4L1Q8NH43 312 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 PCDHB18PQ96TA0 734 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 BPIFA1Q9NP55 256 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 PPP1R14DQ9NXH3 145 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 PZPP20742 1482 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 TOR1BO14657 336 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 SHOXO15266 292 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 COL6A1P12109 1028 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 IL7RP16871 459 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ALAS2P22557 587 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 CYP2C18P33260 490 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 SCIMPQ6UWF3 145 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF808Q8N4W9 903 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 POGLUT1Q8NBL1 392 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 OR4C15Q8NGM1 316 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 POLR2J2Q9GZM3 115 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 TMEM185BQ9H7F4 350 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ANKHQ9HCJ1 492 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 EDNRAP25101 427 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 CARD16Q5EG05 197 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 TREML1Q86YW5 311 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ITFG2Q969R8 447 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 OR2B2Q9GZK3 357 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 PPA2Q9H2U2 334 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 FN3KQ9H479 309 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 SNX15Q9NRS6 342 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 SH2B3Q9UQQ2 575 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ADGRL3Q9HAR2 1447 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 MFSD11O43934 449 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF35P13682 527 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ABL2P42684 1182 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 ZNF616Q08AN1 781 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 KIAA1324Q6UXG2 1013 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 GK5Q6ZS86 529 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 NDC1Q9BTX1 674 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 HTATIP2Q9BUP3 242 aa13.14□□□□□ -0.31
CCDC88A-204ENST00000413716 DPPA5A6NC42 116 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 UGT2B10P36537 528 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 GNPDA1P46926 289 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 BST1Q10588 318 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 PCSK2P16519 638 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 SLC26A2P50443 739 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 SUSD4Q5VX71 490 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 CUZD1Q86UP6 607 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 OR56B2PQ8NGI1 322 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 WDPCPO95876 746 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 CTBP2P56545 445 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 NRG1Q02297 640 aaPredicted RBP13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 DDR1Q08345 913 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 CHRFAM7AQ494W8 412 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 NIPAL1Q6NVV3 410 aa13.13□□□□□ -0.31
CCDC88A-204ENST00000413716 ELMOD2Q8IZ81 293 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms