RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CAND1Q86VP6 1230 aaKnown RBP18.53■□□□□ 0.56
SF3A1-202ENST00000411423 VRK3Q8IV63 474 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 NLGN4XQ8N0W4 816 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 KRT222Q8N1A0 295 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 NLGN4YQ8NFZ3 816 aaPredicted RBP18.53■□□□□ 0.56
SF3A1-202ENST00000411423 CPT1BQ92523 772 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 UBXN4Q92575 508 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 PEX13Q92968 403 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 ZPBPQ9BS86 351 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 KIFC1Q9BW19 673 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 VPS37BQ9H9H4 285 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 HOMER3Q9NSC5 361 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 IL17BQ9UHF5 180 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 CDYLQ9Y232 598 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 HEBP2Q9Y5Z4 205 aa18.53■□□□□ 0.56
SF3A1-202ENST00000411423 BSNQ9UPA5 3926 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 TLCD2A6NGC4 264 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 LIN7AO14910 233 aaPredicted RBP18.52■□□□□ 0.56
SF3A1-202ENST00000411423 SPAG6O75602 509 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 FTH1P02794 183 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 F8A1P23610 371 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 NPY2RP49146 381 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 CSE1LP55060 971 aaKnown RBP18.52■□□□□ 0.56
SF3A1-202ENST00000411423 KRT33BQ14525 404 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 FASTKD1Q53R41 847 aaKnown RBP18.52■□□□□ 0.56
SF3A1-202ENST00000411423 TAF1BQ53T94 588 aaPredicted RBP18.52■□□□□ 0.56
SF3A1-202ENST00000411423 LYPLAL1Q5VWZ2 237 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 KLHL35Q6PF15 583 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 AGGF1Q8N302 714 aaeCLIP18.52■□□□□ 0.567e-6■■■■□ 19.5
SF3A1-202ENST00000411423 EXD3Q8N9H8 876 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 EXTL1Q92935 676 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 PDLIM2Q96JY6 352 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 ULBP3Q9BZM4 244 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 IL22Q9GZX6 179 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 TFB2MQ9H5Q4 396 aaKnown RBP18.52■□□□□ 0.56
SF3A1-202ENST00000411423 CATSPERZQ9NTU4 200 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 POMT2Q9UKY4 750 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 ICKQ9UPZ9 632 aa18.52■□□□□ 0.56
SF3A1-202ENST00000411423 GOLGA8KD6RF30 607 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 GOLGA8TH3BQL2 631 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 TK2O00142 265 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 IFRD1O00458 451 aaPredicted RBP18.51■□□□□ 0.55
SF3A1-202ENST00000411423 CD3EAPO15446 510 aaKnown RBP18.51■□□□□ 0.55
SF3A1-202ENST00000411423 KIAA0754O94854 1291 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 GSTM1P09488 218 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 OR56A5P0C7T3 313 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 GSTM4Q03013 218 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 CCDC137Q6PK04 289 aaKnown RBP18.51■□□□□ 0.55
SF3A1-202ENST00000411423 SPNS2Q8IVW8 549 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 ADGRF3Q8IZF5 1079 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 D2HGDHQ8N465 521 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 SIDT2Q8NBJ9 832 aaKnown RBP18.51■□□□□ 0.55
SF3A1-202ENST00000411423 GALNT6Q8NCL4 622 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 LSM14AQ8ND56 463 aaKnown RBP18.51■□□□□ 0.55
SF3A1-202ENST00000411423 LCN9Q8WX39 176 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.51■□□□□ 0.55
SF3A1-202ENST00000411423 CD180Q99467 661 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 P2RY12Q9H244 342 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 SRMSQ9H3Y6 488 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 MVB12BQ9H7P6 319 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 BFARQ9NZS9 450 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 SNX12Q9UMY4 172 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 SOX13Q9UN79 622 aa18.51■□□□□ 0.55
SF3A1-202ENST00000411423 MRPS18BQ9Y676 258 aaKnown RBP18.51■□□□□ 0.55
SF3A1-202ENST00000411423 UBA6A0AVT1 1052 aaPredicted RBP18.5■□□□□ 0.55
SF3A1-202ENST00000411423 PGRMC1O00264 195 aaKnown RBP18.5■□□□□ 0.55
SF3A1-202ENST00000411423 F7P08709 466 aaPredicted RBP18.5■□□□□ 0.55
SF3A1-202ENST00000411423 MAP4P27816 1152 aaKnown RBP18.5■□□□□ 0.55
SF3A1-202ENST00000411423 STAT5AP42229 794 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 CDK16Q00536 496 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 TUBB3Q13509 450 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 IL11RAQ14626 422 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 GPR19Q15760 415 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 PWWP2BQ6NUJ5 590 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 RASGRP3Q8IV61 690 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 ZNF843Q8N446 348 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 LMNTD1Q8N9Z9 388 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 ACTRT1Q8TDG2 376 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 WBP1Q96G27 269 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 AKIRIN1Q9H9L7 192 aaPredicted RBP18.5■□□□□ 0.55
SF3A1-202ENST00000411423 MRM3Q9HC36 420 aaKnown RBP18.5■□□□□ 0.55
SF3A1-202ENST00000411423 IL1RAPL1Q9NZN1 696 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 PYCARDQ9ULZ3 195 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 PLAGL1Q9UM63 463 aa18.5■□□□□ 0.55
SF3A1-202ENST00000411423 ATRXP46100 2492 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 GSAPA4D1B5 854 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 SLC9B1P1A6NJY1 282 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 QSOX1O00391 747 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 TERTO14746 1132 aaKnown RBP18.49■□□□□ 0.55
SF3A1-202ENST00000411423 NKX2-8O15522 239 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 ZSCAN12O43309 604 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 PHF2O75151 1096 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 GPC4O75487 556 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 VAPBO95292 243 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 PVRP15151 417 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 ST6GAL1P15907 406 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 PRDX3P30048 256 aaKnown RBP18.49■□□□□ 0.55
SF3A1-202ENST00000411423 ABHD18Q0P651 414 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 MAP7Q14244 749 aa18.49■□□□□ 0.55
SF3A1-202ENST00000411423 TBR1Q16650 682 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms