RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 FAM86C1Q9NVL1 165 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 CPSF2Q9P2I0 782 aaKnown RBP13.18□□□□□ -0.3
LIMS1-204ENST00000409441 ATXN10Q9UBB4 475 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 XPR1Q9UBH6 696 aa13.18□□□□□ -0.3
LIMS1-204ENST00000409441 SCN8AQ9UQD0 1980 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 SPTY2D1-AS1A0A0U1RR47 76 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 A0A1B0GVT2 93 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 OR1I1O60431 355 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 PEX11AO75192 247 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 NDUFS3O75489 264 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 CDK14O94921 469 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 EPN2O95208 641 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 S1PR4O95977 384 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 CEACAM5P06731 702 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 OGNP20774 298 aaKnown RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 KELP23276 732 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 ATP5F1P24539 256 aaPredicted RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 AKT1P31749 480 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 RAP1GDS1P52306 607 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 ARHGAP8P85298 464 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 FAM45BPQ6NSW5 357 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 RABEPKQ7Z6M1 372 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 ENDOVQ8N8Q3 282 aaKnown RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 OR56A4Q8NGH8 313 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 CEP76Q8TAP6 659 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 FAM45AQ8TCE6 357 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 WDR92Q96MX6 357 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 BOCQ9BWV1 1114 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 DENND2DQ9H6A0 471 aaPredicted RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 SLC17A4Q9Y2C5 497 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 PCDHGA5Q9Y5G8 931 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 PLXNA2O75051 1894 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 IGLV3-16A0A075B6K0 115 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 CFAP99D6REC4 459 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 MATN2O00339 956 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 TNFRSF10CO14798 259 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 PFDN6O15212 129 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 HDAC3O15379 428 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 VEGFDO43915 354 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 DLX3O60479 287 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 DIAPH2O60879 1101 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 WISP3O95389 354 aaPredicted RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 FUCA1P04066 466 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 CFIP05156 583 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 RBP1P09455 135 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 LTA4HP09960 611 aaKnown RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 ATP1B2P14415 290 aaPredicted RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 ZNF8P17098 575 aaPredicted RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 PGM1P36871 562 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 NBL1P41271 181 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 GLRBP48167 497 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 RPL14P50914 215 aaKnown RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 NXPH1P58417 271 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 B4GALNT1Q00973 533 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 DLG1Q12959 904 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 FZD2Q14332 565 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 TYSND1Q2T9J0 566 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 KIF19Q2TAC6 998 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 ZNF789Q5FWF6 425 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 TECRLQ5HYJ1 363 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 RBM20Q5T481 1227 aaKnown RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 HECTD2Q5U5R9 776 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 MACC1Q6ZN28 852 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 PIWIL4Q7Z3Z4 852 aaKnown RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 KIRREL3Q8IZU9 778 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 RBFAQ8N0V3 343 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 CLDN19Q8N6F1 224 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 RASGEF1AQ8N9B8 481 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 SGF29Q96ES7 293 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 CCDC97Q96F63 343 aaPredicted RBP13.17□□□□□ -0.3
LIMS1-204ENST00000409441 ANKRD27Q96NW4 1050 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 COG4Q9H9E3 785 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 IGSF5Q9NSI5 407 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 MOSPD1Q9UJG1 213 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 CRYL1Q9Y2S2 319 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 HCN4Q9Y3Q4 1203 aa13.17□□□□□ -0.3
LIMS1-204ENST00000409441 PATE3B3GLJ2 98 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 NUAK1O60285 661 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 RETP07949 1114 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 ZNF7P17097 686 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-204ENST00000409441 MPLP40238 635 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 NSG1P42857 185 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 CCNG1P51959 295 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 SRP54P61011 504 aaKnown RBP13.16□□□□□ -0.3
LIMS1-204ENST00000409441 EIF2B5Q13144 721 aaKnown RBP13.16□□□□□ -0.3
LIMS1-204ENST00000409441 UBAP2LQ14157 1087 aaKnown RBP13.16□□□□□ -0.3
LIMS1-204ENST00000409441 ZNF460Q14592 562 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 ACAP2Q15057 778 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 CCDC6Q16204 474 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 DET1Q7L5Y6 550 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 RD3Q7Z3Z2 195 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 RBM15BQ8NDT2 890 aaKnown RBP13.16□□□□□ -0.3
LIMS1-204ENST00000409441 NAT14Q8WUY8 206 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 SLC39A7Q92504 469 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 TSACCQ96A04 125 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-204ENST00000409441 CMTM5Q96DZ9 223 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 OLFM1Q99784 485 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 TACO1Q9BSH4 297 aaKnown RBP13.16□□□□□ -0.3
LIMS1-204ENST00000409441 CCDC28BQ9BUN5 200 aa13.16□□□□□ -0.3
LIMS1-204ENST00000409441 ZCCHC2Q9C0B9 1178 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms