RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MAPRE3Q9UPY8 281 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 EFR3BQ9Y2G0 817 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 PCDHGC5Q9Y5F6 944 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 ERI2A8K979 691 aaKnown RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 C2orf74A8MZ97 194 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 MYL12BO14950 172 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 PROSCO94903 275 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 SYNGR4O95473 234 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 EGFP01133 1207 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 VAV1P15498 845 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 CD151P48509 253 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 SUOXP51687 545 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 CCNHP51946 323 aaPredicted RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 SOWAHAQ2M3V2 549 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF805Q5CZA5 627 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 PPM1JQ5JR12 505 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 EGFLAMQ63HQ2 1017 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 WDR59Q6PJI9 974 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 Q6ZSR6 202 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 GALNT7Q86SF2 657 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 UNC5BQ8IZJ1 945 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 KLHL1Q9NR64 748 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 HRASLS2Q9NWW9 162 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 KCNK6Q9Y257 313 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 C2orf78A6NCI8 922 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 TMEM114B3SHH9 223 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 DHX15O43143 795 aaKnown RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 RFPL3O75679 317 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 PIRTP0C851 137 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 ZNF30P17039 623 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 ATP6V1B2P21281 511 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 FBLP22087 321 aaKnown RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 HOXA9P31269 272 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 MAZP56270 477 aaKnown RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 C1orf53Q5VUE5 145 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 NIPAL1Q6NVV3 410 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 MACC1Q6ZN28 852 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 C14orf80Q86SX3 495 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 GOT1L1Q8NHS2 421 aaPredicted RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 LNX1Q8TBB1 728 aaPredicted RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 CCDC126Q96EE4 140 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 RXFP1Q9HBX9 757 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 SDHAF3Q9NRP4 125 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 DUSP12Q9UNI6 340 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 RGPD5Q99666 1765 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 A0A1B0GVT2 93 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 TTC26A0AVF1 554 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 CPSF4O95639 269 aaKnown RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 RBP1P09455 135 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 TSPAN19P0C672 248 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 NT5EP21589 574 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 SSR2P43308 183 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 C1orf94Q6P1W5 598 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 CRELD2Q6UXH1 353 aaPredicted RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 CYP4Z1Q86W10 505 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 SLC44A3Q8N4M1 653 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 MINDY1Q8N5J2 469 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 HDAC2Q92769 488 aaKnown RBP7.19□□□□□ -1.26
SCN9A-202ENST00000409435 FER1L6-AS2Q96M78 137 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 S100A13Q99584 98 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 DKKL1Q9UK85 242 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 PCDHGA2Q9Y5H1 932 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 SLX4Q8IY92 1834 aa7.19□□□□□ -1.26
SCN9A-202ENST00000409435 BTN3A1O00481 513 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 TMCC2O75069 709 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 SIN3BO75182 1162 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 ERCC2P18074 760 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 HPCAL1P37235 193 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 CCL11P51671 97 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 DEFA5Q01523 94 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 TNK2Q07912 1038 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 IL10RBQ08334 325 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 C4orf46Q504U0 113 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 FRMD7Q6ZUT3 714 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 COMMD2Q86X83 199 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 CCDC28AQ8IWP9 274 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 ZBTB8BQ8NAP8 495 aaPredicted RBP7.18□□□□□ -1.26
SCN9A-202ENST00000409435 RAD51AP1Q96B01 352 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 MAGEB18Q96M61 343 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 BDH2Q9BUT1 245 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 FZD3Q9NPG1 666 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 HEY2Q9UBP5 337 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 GFRA2O00451 464 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 SH3BGRLO75368 114 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 PKMP14618 531 aaKnown RBP7.18□□□□□ -1.26
SCN9A-202ENST00000409435 MYL12AP19105 171 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 TCEA1P23193 301 aaKnown RBP7.18□□□□□ -1.26
SCN9A-202ENST00000409435 CTHP32929 405 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 CCR10P46092 362 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 PHC1P78364 1004 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 ALFQ53S48 1182 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 PYHIN1Q6K0P9 492 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 TRIM40Q6P9F5 258 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 VASH1Q7L8A9 365 aaPredicted RBP7.18□□□□□ -1.26
SCN9A-202ENST00000409435 PHC2Q8IXK0 858 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 ZIM3Q96PE6 472 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 RTKNQ9BST9 563 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 LRRC1Q9BTT6 524 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 IL1RL2Q9HB29 575 aa7.18□□□□□ -1.26
SCN9A-202ENST00000409435 XPNPEP1Q9NQW7 623 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms