RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 PAPSS1O43252 624 aaPredicted RBP4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 MITFO75030 526 aaPredicted RBP4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 PAPSS2O95340 614 aaPredicted RBP4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 ZBTB11O95625 1053 aaPredicted RBP4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 ACTN1P12814 892 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 S1PR1P21453 382 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 CLDN20P56880 219 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 DSCR9P59020 149 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 FKBP1AP62942 108 aaKnown RBP4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 TUBA1BP68363 451 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 IFI35P80217 286 aaPredicted RBP4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 DLG1Q12959 904 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 SF3B4Q15427 424 aaKnown RBP eCLIP4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 RARS2Q5T160 578 aaKnown RBP4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 CFAP58Q5T655 872 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 C18orf63Q68DL7 685 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 BRAT1Q6PJG6 821 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 CCNI2Q6ZMN8 369 aaPredicted RBP4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 KRBA2Q6ZNG9 492 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 CREB3L2Q70SY1 520 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 KBTBD6Q86V97 674 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 HACE1Q8IYU2 909 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 SLC44A1Q8WWI5 657 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 TAAR8Q969N4 342 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 JAKMIP2Q96AA8 810 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 SLC22A18Q96BI1 424 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 FEM1CQ96JP0 617 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 PAFAH2Q99487 392 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 SYT17Q9BSW7 474 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 FSD1Q9BTV5 496 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 HIPK2Q9H2X6 1198 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 MAGIXQ9H6Y5 334 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 GAREM1Q9H706 876 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 PLSCR4Q9NRQ2 329 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 MALT1Q9UDY8 824 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 FBXL2Q9UKC9 423 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 B3GALT5Q9Y2C3 310 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 COL1A1P02452 1464 aaPredicted RBP4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 TIAM2Q8IVF5 1701 aa4.86□□□□□ -1.63
HMGB3P19-201ENST00000403971 FAM90A26D6RGX4 464 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 MAP2K7O14733 419 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 HS3ST1O14792 307 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 ANKRD28O15084 1053 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 RNF113AO15541 343 aaKnown RBP4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 FIBPO43427 364 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 FRAT2O75474 233 aaPredicted RBP4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 ERAL1O75616 437 aaKnown RBP4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 REC8O95072 547 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 PMS2P2O95744 297 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 FASLGP48023 281 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 MMP14P50281 582 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 PEX5P50542 639 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 PPP2R2BQ00005 443 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 SLC20A2Q08357 652 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 KCNC3Q14003 757 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 BECN1Q14457 450 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 PCLAFQ15004 111 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 LCN10Q6JVE6 187 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 PAPD4Q6PIY7 484 aaKnown RBP4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 OLFM4Q6UX06 510 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 SATL1Q86VE3 508 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 ZDHHC17Q8IUH5 632 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 CCDC89Q8N998 374 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 LILRB1Q8NHL6 650 aaPredicted RBP4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 GSDMBQ8TAX9 411 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 SLC20A1Q8WUM9 679 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 MED30Q96HR3 178 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 LYZL4Q96KX0 146 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 NUDCD1Q96RS6 583 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 DNAJC18Q9H819 358 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 UPF2Q9HAU5 1272 aaKnown RBP4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 PCDH9Q9HC56 1237 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 MCM9Q9NXL9 1143 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 SMARCAL1Q9NZC9 954 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 ZNF224Q9NZL3 707 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 CHORDC1Q9UHD1 332 aaPredicted RBP4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 SIX4Q9UIU6 781 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 LAMB1P07942 1786 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 NAV1Q8NEY1 1877 aa4.85□□□□□ -1.63
HMGB3P19-201ENST00000403971 SCN4AP35499 1836 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 RPAP1Q9BWH6 1393 aaPredicted RBP4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 MYO3BQ8WXR4 1341 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 GOLGA6L9A6NEM1 432 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 ZNF587BE7ETH6 402 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 ADAMDEC1O15204 470 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 KCNN4O15554 427 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 PPIP5K2O43314 1243 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 ECE2O60344 883 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 IDH1O75874 414 aaKnown RBP4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 MYOD1P15172 320 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 UGT1A1P22309 533 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 ISL1P61371 349 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 SEC61A1P61619 476 aaKnown RBP4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 ZXDBP98169 803 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 PDE1BQ01064 536 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 KIF5AQ12840 1032 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 TNFAIP1Q13829 316 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 KCTD2Q14681 263 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 CCDC96Q2M329 555 aa4.84□□□□□ -1.63
HMGB3P19-201ENST00000403971 MYLK3Q32MK0 819 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms