RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RPS24P62847 133 aaKnown RBP20.61■□□□□ 0.89
CTCF-202ENST00000401394 PHC1P78364 1004 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 CARD16Q5EG05 197 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 COQ5Q5HYK3 327 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 GOLGA7Q7Z5G4 137 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 TEX26Q8N6G2 289 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 ZNF548Q8NEK5 533 aaPredicted RBP20.61■□□□□ 0.89
CTCF-202ENST00000401394 ZNF555Q8NEP9 628 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 PTPN18Q99952 460 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 AKIP1Q9NQ31 210 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 KDM1AO60341 852 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 LRATO95237 230 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 PRLP01236 227 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 CDK5R2Q13319 367 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 GTF2H3Q13889 308 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 PON2Q15165 354 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 C6orf183Q5T699 404 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 NECAB2Q7Z6G3 386 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 GOLM1Q8NBJ4 401 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 OR7A2PQ8NGA2 310 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 GTF2H4Q92759 462 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 HDAC2Q92769 488 aaKnown RBP20.61■□□□□ 0.89
CTCF-202ENST00000401394 TADA1Q96BN2 335 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 PYCR2Q96C36 320 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 INPP5KQ9BT40 448 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 SYTL2Q9HCH5 934 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 RNF181Q9P0P0 153 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 TSC22D4Q9Y3Q8 395 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 PCDHB14Q9Y5E9 798 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 HAS3O00219 553 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 ZNF140P52738 457 aaPredicted RBP20.61■□□□□ 0.89
CTCF-202ENST00000401394 MRPS6P82932 125 aaKnown RBP20.61■□□□□ 0.89
CTCF-202ENST00000401394 TSPY1Q01534 308 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 TRIP4Q15650 581 aaPredicted RBP20.61■□□□□ 0.89
CTCF-202ENST00000401394 SUSD1Q6UWL2 747 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 SLC22A16Q86VW1 577 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 RNF175Q8N4F7 328 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 PSMA8Q8TAA3 256 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 BOCQ9BWV1 1114 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 ELOVL2Q9NXB9 296 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 GIN1Q9NXP7 522 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 TRMT6Q9UJA5 497 aaKnown RBP20.61■□□□□ 0.89
CTCF-202ENST00000401394 TLR6Q9Y2C9 796 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 SNX5Q9Y5X3 404 aa20.61■□□□□ 0.89
CTCF-202ENST00000401394 A0A1W2PQ67 120 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 CXCR6O00574 342 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 TNPO2O14787 897 aaKnown RBP20.6■□□□□ 0.89
CTCF-202ENST00000401394 LCKP06239 509 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 ZNF865P0CJ78 1059 aaPredicted RBP20.6■□□□□ 0.89
CTCF-202ENST00000401394 CYP4F3Q08477 520 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 SYT16Q17RD7 645 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 TYSND1Q2T9J0 566 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 PLEKHH3Q7Z736 793 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 DCP2Q8IU60 420 aaKnown RBP20.6■□□□□ 0.89
CTCF-202ENST00000401394 SCML4Q8N228 414 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 CORO1BQ9BR76 489 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 RNF167Q9H6Y7 350 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 IPPKQ9H8X2 491 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 ZIM2Q9NZV7 527 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 ABCG2Q9UNQ0 655 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 MYO1GB0I1T2 1018 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 hCG_2039718K7EN88 272 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 TPTEP56180 551 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 PAGE2Q7Z2X7 111 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 ZNF551Q7Z340 670 aaPredicted RBP20.6■□□□□ 0.89
CTCF-202ENST00000401394 B3GNT8Q7Z7M8 397 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 OR6K2Q8NGY2 324 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 LKAAEAR1Q8TD35 194 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 BHMTQ93088 406 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 MROQ9BYG7 248 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 CRISPLD1Q9H336 500 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 PADI3Q9ULW8 664 aa20.6■□□□□ 0.89
CTCF-202ENST00000401394 SYCE1LA8MT33 242 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 E5RI56 91 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 SERPINF2P08697 491 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 SGSHP51688 502 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 MVKQ03426 396 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 PWP1Q13610 501 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 KIAA0040Q15053 153 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 VARS2Q5ST30 1063 aaKnown RBP20.59■□□□□ 0.89
CTCF-202ENST00000401394 CES5AQ6NT32 575 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 MFSD4AQ8N468 514 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 LIX1Q8N485 282 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 GPR150Q8NGU9 434 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 SLC13A3Q8WWT9 602 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 MARCH7Q9H992 704 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 ABCB10Q9NRK6 738 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 CAB39Q9Y376 341 aaPredicted RBP20.59■□□□□ 0.89
CTCF-202ENST00000401394 ZNF99A8MXY4 864 aaPredicted RBP20.59■□□□□ 0.89
CTCF-202ENST00000401394 M0R3G1 203 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 PKMP14618 531 aaKnown RBP20.59■□□□□ 0.89
CTCF-202ENST00000401394 CDKN2CP42773 168 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 GBX1Q14549 363 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 NPTX1Q15818 432 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 FXNQ16595 210 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 GALNT7Q86SF2 657 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 TERB1Q8NA31 727 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 PNPT1Q8TCS8 783 aaKnown RBP20.59■□□□□ 0.89
CTCF-202ENST00000401394 TRIB3Q96RU7 358 aa20.59■□□□□ 0.89
CTCF-202ENST00000401394 SCUBE2Q9NQ36 999 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms