RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SPANXN4Q5MJ08 99 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 MILR1Q7Z6M3 343 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 PHACTR4Q8IZ21 702 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 ABI1Q8IZP0 508 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 MUL1Q969V5 352 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 CCDC138Q96M89 665 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 SEPT5Q99719 369 aaPredicted RBP12.48□□□□□ -0.41
SHMT1-205ENST00000395684 RBM4BQ9BQ04 359 aaKnown RBP12.48□□□□□ -0.41
SHMT1-205ENST00000395684 RBM4Q9BWF3 364 aaKnown RBP12.48□□□□□ -0.41
SHMT1-205ENST00000395684 INIPQ9NRY2 104 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 SLC6A13Q9NSD5 602 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 ELOVL2Q9NXB9 296 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 BAG5Q9UL15 447 aa12.48□□□□□ -0.41
SHMT1-205ENST00000395684 LOC100130705A0A1B0GUX0 176 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 ELOVL7A1L3X0 281 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 CXCR6O00574 342 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 FFAR3O14843 346 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 PFDN6O15212 129 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 GPR42O15529 346 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 TAPBPO15533 448 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 FFAR2O15552 330 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 PRAMEF12O95522 483 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 GDF5P43026 501 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 PTGER3P43115 390 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 GP2P55259 537 aaKnown RBP12.47□□□□□ -0.41
SHMT1-205ENST00000395684 GABARAPL2P60520 117 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 HMGCS1Q01581 520 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 SPIDRQ14159 915 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 GPR162Q16538 588 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 CTF1Q16619 201 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 GLB1LQ6UWU2 654 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 C10orf111Q8N326 155 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 TTC30BQ8N4P2 665 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 KRTCAP2Q8N6L1 136 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 EID2BQ96D98 161 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 SH3YL1Q96HL8 342 aaPredicted RBP12.47□□□□□ -0.41
SHMT1-205ENST00000395684 FBXO10Q9UK96 956 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 B3GNT3Q9Y2A9 372 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 DHRS7Q9Y394 339 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 TNPO3Q9Y5L0 923 aaKnown RBP12.47□□□□□ -0.41
SHMT1-205ENST00000395684 CBX4O00257 560 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 SLC1A7O00341 560 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 HS6ST1O60243 411 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 ACSL4O60488 711 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 VNN2O95498 520 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 OTCP00480 354 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 FSHRP23945 695 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 DCTP40126 519 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 MAGEA8P43361 318 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 SGSHP51688 502 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 GSTM4Q03013 218 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 EPS8Q12929 822 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 PON2Q15165 354 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 NIPAL1Q6NVV3 410 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 SVOPLQ8N434 492 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 FAM162AQ96A26 154 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 PDLIM5Q96HC4 596 aaKnown RBP12.47□□□□□ -0.41
SHMT1-205ENST00000395684 ITCHQ96J02 903 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 PPP3R2Q96LZ3 170 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 ZFP14Q9HCL3 533 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 ENPP5Q9UJA9 477 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 U3KQV3 271 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 CHD5Q8TDI0 1954 aa12.47□□□□□ -0.41
SHMT1-205ENST00000395684 TMEM221A6NGB7 291 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 ADAM23O75077 832 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 PGRP06401 933 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 PFKLP17858 780 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 AKT1P31749 480 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 CA5AP35218 305 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 RUNDC3AQ59EK9 446 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 RSPO2Q6UXX9 243 aaPredicted RBP12.46□□□□□ -0.41
SHMT1-205ENST00000395684 OR10Q1Q8NGQ4 319 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 GIPC2Q8TF65 315 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 NODALQ96S42 347 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 ZNF347Q96SE7 839 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 DCAF13Q9NV06 445 aaKnown RBP12.46□□□□□ -0.41
SHMT1-205ENST00000395684 TRNAU1APQ9NX07 287 aaKnown RBP12.46□□□□□ -0.41
SHMT1-205ENST00000395684 TMEFF2Q9UIK5 374 aaPredicted RBP12.46□□□□□ -0.41
SHMT1-205ENST00000395684 COMMD10Q9Y6G5 202 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 H7C0S8 307 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 TMEM189-UBE2V1I3L0A0 370 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 AREL1O15033 823 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 MAN1A2O60476 641 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 ZDHHC11BP0C7U3 371 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 ITGB6P18564 788 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 CDH4P55283 916 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 FAM171A1Q5VUB5 890 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 ZNF691Q5VV52 312 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 SUSD1Q6UWL2 747 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 GCNT7Q6ZNI0 430 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 ADAMTSL2Q86TH1 951 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 DCP2Q8IU60 420 aaKnown RBP12.46□□□□□ -0.41
SHMT1-205ENST00000395684 CHPFQ8IZ52 775 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 LIX1Q8N485 282 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 TMCO5AQ8N6Q1 288 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 CNIH3Q8TBE1 160 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 NETO1Q8TDF5 533 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 ZBTB18Q99592 522 aa12.46□□□□□ -0.41
SHMT1-205ENST00000395684 TRMT13Q9NUP7 481 aaKnown RBP12.46□□□□□ -0.41
SHMT1-205ENST00000395684 BLOC1S6Q9UL45 172 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms