RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 MAD1L1Q9Y6D9 718 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 INPP4BO15327 924 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 GFRA3O60609 400 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 SLC19A1P41440 591 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 RPIAP49247 311 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 AP1S2P56377 157 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 TMPRSS15P98073 1019 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 E2F1Q01094 437 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 ARMCX6Q7L4S7 300 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 SPRED1Q7Z699 444 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 TRIM74Q86UV6 250 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 SLITRK4Q8IW52 837 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 ARL14Q8N4G2 192 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 KYQ8NBH2 561 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 CCL4L1Q8NHW4 92 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 ADAMTS14Q8WXS8 1223 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 SGF29Q96ES7 293 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 APOLD1Q96LR9 279 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 NT5DC2Q9H857 520 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 FAM86C1Q9NVL1 165 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 FAM53CQ9NYF3 392 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 PPT2Q9UMR5 302 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 PLEKHM1Q9Y4G2 1056 aa6.84□□□□□ -1.31
LIMA1-202ENST00000394943 NPIPB8E9PQR5 432 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 SIGLEC6O43699 453 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 VPS26AO75436 327 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TAS2R39P59534 338 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 DLG1Q12959 904 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 NFE2L1Q14494 772 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 EFTUD2Q15029 972 aaKnown RBP eCLIP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ACAP2Q15057 778 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TMED2Q15363 201 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TTLL9Q3SXZ7 439 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TCEAL6Q6IPX3 200 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 DCLK2Q8N568 766 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 OR4K1Q8NGD4 311 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 MAPK15Q8TD08 544 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TCEAL3Q969E4 200 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ERLEC1Q96DZ1 483 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 SPRY4Q9C004 299 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 SENP1Q9P0U3 644 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 NCDNQ9UBB6 729 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 IKZF3Q9UKT9 509 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 BTRCQ9Y297 605 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 RNF215Q9Y6U7 377 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 AGPSO00116 658 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 PRPF4O43172 522 aaKnown RBP eCLIP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 CDH16O75309 829 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 DXOO77932 396 aaKnown RBP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 KLHL2O95198 593 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TRIM16O95361 564 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 SHBGP04278 402 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ANXA6P08133 673 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 DHRS4L1P0CG22 281 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 CD1CP29017 333 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ZNF844Q08AG5 666 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 MAP7Q14244 749 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 KCTD19Q17RG1 926 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ZXDCQ2QGD7 858 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TSNAXIP1Q2TAA8 658 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TECRLQ5HYJ1 363 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TMEM26Q6ZUK4 368 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ARHGAP22Q7Z5H3 698 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 DCUN1D3Q8IWE4 304 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 HOMEZQ8IX15 550 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ADGRF3Q8IZF5 1079 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TCAIMQ8N3R3 496 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TAB3Q8N5C8 712 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 OR4D9Q8NGE8 314 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 OR6P1Q8NGX9 317 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 RDH11Q8TC12 318 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 IFT81Q8WYA0 676 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 LIN37Q96GY3 246 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 GPRC5BQ9NZH0 403 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 OR6C2Q9NZP2 312 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 PTBP2Q9UKA9 531 aaKnown RBP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 BTBD3Q9Y2F9 522 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 FAM47DPA6NHR8 397 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TYROBPO43914 113 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 NIPSNAP2O75323 286 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 RPN2P04844 631 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 APOA4P06727 396 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 SNRPAP09012 282 aaKnown RBP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 CRHR1P34998 444 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ARFIP1P53367 373 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 DNAJB13P59910 316 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 CFHR1Q03591 330 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ACSBG2Q5FVE4 666 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 AGBL2Q5U5Z8 902 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 LAYNQ6UX15 382 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 ISCA2Q86U28 154 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 TRABD2AQ86V40 505 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 SLC37A2Q8TED4 501 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 SETD7Q8WTS6 366 aaKnown RBP6.83□□□□□ -1.32
LIMA1-202ENST00000394943 SNX19Q92543 992 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 WWP1Q9H0M0 922 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 EHD1Q9H4M9 534 aa6.83□□□□□ -1.32
LIMA1-202ENST00000394943 KLC4Q9NSK0 619 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms