RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 EEF1DP29692 281 aaKnown RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 P2RY2P41231 377 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 BLKP51451 505 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 PRKAG1P54619 331 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 ACTR3P61158 418 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 TRIP10Q15642 601 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 DBN1Q16643 649 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 PGS1Q32NB8 556 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 DRICH1Q6PGQ1 229 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 CERS6Q6ZMG9 384 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 ADIPOR2Q86V24 386 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 FAM20CQ8IXL6 584 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 PIANPQ8IYJ0 282 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 NKAPQ8N5F7 415 aaKnown RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 EFCAB3Q8N7B9 438 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 IL17RCQ8NAC3 791 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 CLHC1Q8NHS4 586 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 EEF1AKMT1Q8WVE0 214 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 SCRN2Q96FV2 425 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 SIGLEC10Q96LC7 697 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 CDK15Q96Q40 435 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 C6orf106Q9H6K1 298 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 IL26Q9NPH9 171 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 RAD18Q9NS91 495 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 KRT87PA6NCN2 255 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 PSMD12O00232 456 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 CDC7O00311 574 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 ZW10O43264 779 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 ERAL1O75616 437 aaKnown RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 LATS1O95835 1130 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 ENO3P13929 434 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 POLR2CP19387 275 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 EFNA1P20827 205 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 SERPINB5P36952 375 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 AQP5P55064 265 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 GPX6P59796 221 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 MEF2AQ02078 507 aaPredicted RBP10.12□□□□□ -0.79
COL6A3-205ENST00000392004 HTR4Q13639 388 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 AAGABQ6PD74 315 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 TRIM73Q86UV7 250 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 HORMAD1Q86X24 394 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 GLYATL1Q969I3 302 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 FAM83CQ9BQN1 747 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 ZSCAN5AQ9BUG6 496 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 SNX8Q9Y5X2 465 aa10.12□□□□□ -0.79
COL6A3-205ENST00000392004 A0A0J9YVX5 310 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 H3BMM5 538 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 PDLIM1O00151 329 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 CPSF4O95639 269 aaKnown RBP10.11□□□□□ -0.79
COL6A3-205ENST00000392004 TNFP01375 233 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 MLNP12872 115 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 TPMTP51580 245 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 LSAMPQ13449 338 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 MBOAT1Q6ZNC8 495 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 DHDDSQ86SQ9 333 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 METTL27Q8N6F8 245 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-205ENST00000392004 RIN3Q8TB24 985 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 ABTB1Q969K4 478 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-205ENST00000392004 VWCEQ96DN2 955 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 MRPL46Q9H2W6 279 aaKnown RBP10.11□□□□□ -0.79
COL6A3-205ENST00000392004 KCNE2Q9Y6J6 123 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 A0A1B0GVT2 93 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 MGAT4DA6NG13 374 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 SLC7A4O43246 635 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 ATP1B2P14415 290 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-205ENST00000392004 OPRD1P41143 372 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 PLA2G16P53816 162 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 HYAL2Q12891 473 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 SLC9A5Q14940 896 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 TRIM61Q5EBN2 209 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 BHLHA9Q7RTU4 235 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 C10orf107Q8IVU9 208 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.11□□□□□ -0.79
COL6A3-205ENST00000392004 MDGA1Q8NFP4 955 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 OR2I1PQ8NGU4 316 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 HEXDCQ8WVB3 486 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 KCNN1Q92952 543 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 C1orf50Q9BV19 199 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 FSCN3Q9NQT6 498 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 RHBDL2Q9NX52 303 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 KCTD5Q9NXV2 234 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 SOCS5O75159 536 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 MOSPD3O75425 235 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 PENKP01210 267 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-205ENST00000392004 MYF5P13349 255 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 UQCRBP14927 111 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 HOXC13P31276 330 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 SPINT3P49223 89 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 CDKN3Q16667 212 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 LYSMD4Q5XG99 296 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 LIPIQ6XZB0 460 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 GPR135Q8IZ08 494 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 NXPE1Q8N323 547 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 FNDC5Q8NAU1 212 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 PYDC1Q8WXC3 89 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 LZICQ8WZA0 190 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 PPWD1Q96BP3 646 aaKnown RBP10.11□□□□□ -0.79
COL6A3-205ENST00000392004 MTERF1Q99551 399 aaKnown RBP10.11□□□□□ -0.79
COL6A3-205ENST00000392004 ZDHHC3Q9NYG2 299 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 TMEM216Q9P0N5 145 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms