RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 UNC50Q53HI1 259 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 PNCKQ6P2M8 343 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 TMEM220Q6QAJ8 160 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 SBSNQ6UWP8 590 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 CUZD1Q86UP6 607 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 MAPK15Q8TD08 544 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 ERLEC1Q96DZ1 483 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 MAELQ96JY0 434 aaKnown RBP17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 FOPNLQ96NB1 174 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 MKRN2Q9H000 416 aaKnown RBP17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 POLMQ9NP87 494 aaPredicted RBP17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 CNOT6Q9ULM6 557 aaKnown RBP17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 BPTFQ12830 3046 aa17.84■□□□□ 0.45
CCDC88C-203ENST00000389856 ANTXRLA6NF34 631 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 E9PBE3 544 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 NARSO43776 548 aaKnown RBP17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 KLHL41O60662 606 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 SOD1P00441 154 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 PIK3R1P27986 724 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 PIK3CGP48736 1102 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 SLC25A3Q00325 362 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 CDKL1Q00532 357 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 CCINQ13939 588 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 LSM12Q3MHD2 195 aaKnown RBP17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 APLFQ8IW19 511 aaPredicted RBP17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 ASB12Q8WXK4 309 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 OR52B2Q96RD2 323 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 EGFL8Q99944 293 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 PHPT1Q9NRX4 125 aaPredicted RBP17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 ZDHHC2Q9UIJ5 367 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 IKZF3Q9UKT9 509 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 DUSP12Q9UNI6 340 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 LRCH1Q9Y2L9 728 aa17.83■□□□□ 0.45
CCDC88C-203ENST00000389856 F5P12259 2224 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 C17orf113A0A1B0GUU1 675 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 NCF1BA6NI72 391 aaPredicted RBP17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 NCF1CA8MVU1 366 aaPredicted RBP17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 LOC730098B7Z3J9 87 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 CRCPO75575 148 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 SLCO2B1O94956 709 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 ANXA5P08758 320 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 NCF1P14598 390 aaPredicted RBP17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 ANPEPP15144 967 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 ITGAXP20702 1163 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 COL9A1P20849 921 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 AP1S2P56377 157 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 CLCQ05315 142 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 CUL3Q13618 768 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 PCBP2Q15366 365 aaKnown RBP eCLIP17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 PPP1R3AQ16821 1122 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 CYHR1Q6ZMK1 362 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 HORMAD1Q86X24 394 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 TRAPPC5Q8IUR0 188 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 FBXW8Q8N3Y1 598 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 CHCHD4Q8N4Q1 142 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 POU5F2Q8N7G0 328 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 OR56A4Q8NGH8 313 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 CEP70Q8NHQ1 597 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 MCOLN3Q8TDD5 553 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 SHDQ96IW2 340 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 LINC00615Q96LM1 132 aaPredicted RBP17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 C1QTNF2Q9BXJ5 285 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 SLC12A9Q9BXP2 914 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 OR2AG1Q9H205 316 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 VCX3BQ9H321 246 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 PARVBQ9HBI1 364 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 NMRK1Q9NWW6 199 aa17.83■□□□□ 0.44
CCDC88C-203ENST00000389856 RNGTTO60942 597 aaKnown RBP17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 GPC4O75487 556 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 PCCBP05166 539 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 MAP4P27816 1152 aaKnown RBP17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 HNMTP50135 292 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 ADPRHP54922 357 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 IRX1P78414 480 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 CDC16Q13042 620 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 CYLC2Q14093 348 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 MAPRE2Q15555 327 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 HABP4Q5JVS0 413 aaKnown RBP17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 KIAA1324Q6UXG2 1013 aaKnown RBP17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 UBE2R2Q712K3 238 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 CLYBLQ8N0X4 340 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 KYQ8NBH2 561 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 AGR3Q8TD06 166 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 ZNF483Q8TF39 744 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 UBTD2Q8WUN7 234 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 COX14Q96I36 57 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 WDR26Q9H7D7 661 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 UTP6Q9NYH9 597 aaKnown RBP17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 WWOXQ9NZC7 414 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 SERGEFQ9UGK8 458 aa17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 TSR3Q9UJK0 312 aaKnown RBP17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 DNMT3AQ9Y6K1 912 aaPredicted RBP17.82■□□□□ 0.44
CCDC88C-203ENST00000389856 TBC1D3DA0A087WVF3 549 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TBC1D3IA0A087WXS9 549 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TBC1D3EA0A087X179 549 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TBC1D3KA0A087X1G2 549 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 A0A1W2PQU0 124 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 TBC1D3FA6NER0 549 aaPredicted RBP17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 LRRC72A6NJI9 287 aa17.81■□□□□ 0.44
CCDC88C-203ENST00000389856 MEI4A8MW99 385 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms