RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 ZNF230Q9UIE0 474 aaPredicted RBP-0.92□□□□□ -2.56
RNU6-540P-201ENST00000384622 SLC39A10Q9ULF5 831 aa-0.92□□□□□ -2.56
RNU6-540P-201ENST00000384622 RNF123Q5XPI4 1314 aa-0.92□□□□□ -2.56
RNU6-540P-201ENST00000384622 COL24A1Q17RW2 1714 aa-0.92□□□□□ -2.56
RNU6-540P-201ENST00000384622 DNAH6Q9C0G6 4158 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 VPS13DQ5THJ4 4388 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 LTBP2Q14767 1821 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 SLX4Q8IY92 1834 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 IGKV1D-42A0A075B6H8 117 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 IGLV4-3A0A075B6K6 122 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 A0A0G2JNG1 304 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 A0A1W2PPK0 400 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 TRIM43BA6NCK2 446 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 C5orf60A6NFR6 353 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 M0QYT0 321 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 EEF2KO00418 725 aaKnown RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 PCDHGA12O60330 932 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 IGSF3O75054 1194 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 ATP2C2O75185 946 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 SPINK1P00995 79 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 CYP3A4P08684 503 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 G6PDP11413 515 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 HSD3B1P14060 373 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 ATP2B1P20020 1258 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 UGT1A1P22309 533 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 BDKRB2P30411 391 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 HTR1FP30939 366 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 EIF2S3P41091 472 aaKnown RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 ELK3P41970 407 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 PIK3CAP42336 1068 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 PIK3CBP42338 1070 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 RPL34P49207 117 aaKnown RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 RPL15P61313 204 aaKnown RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 GPR17Q13304 367 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 KIR2DS5Q14953 304 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 BRDTQ58F21 947 aaPredicted RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 SOGA3Q5TF21 947 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 MSANTD2Q6P1R3 559 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 MTFR2Q6P444 385 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 PLXDC2Q6UX71 529 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 USP45Q70EL2 814 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 C2CD5Q86YS7 1000 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 FMNL3Q8IVF7 1028 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 VPS52Q8N1B4 723 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 ZNF525Q8N782 197 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 NIPA2Q8N8Q9 360 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 OR2T12Q8NG77 320 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 SMAP2Q8WU79 429 aaPredicted RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 IPCEF1Q8WWN9 437 aaPredicted RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 TRIM43Q96BQ3 446 aaPredicted RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 SLC47A1Q96FL8 570 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 ZSCAN31Q96LW9 406 aaPredicted RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 OBSCN-AS1Q96MR7 158 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 SEMA3CQ99985 751 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 NUDT22Q9BRQ3 303 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 LRRCC1Q9C099 1032 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 GPR88Q9GZN0 384 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 LRMDAQ9H2I8 198 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 PNNQ9H307 717 aaKnown RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 ATP13A3Q9H7F0 1226 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 ARNT2Q9HBZ2 717 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 ZBTB26Q9HCK0 441 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 MYOZ1Q9NP98 299 aaPredicted RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 B3GAT2Q9NPZ5 323 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 CUTCQ9NTM9 273 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 SPATS2LQ9NUQ6 558 aaKnown RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 CISD1Q9NZ45 108 aaKnown RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 NDRG3Q9UGV2 375 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 RCOR1Q9UKL0 485 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 RAB21Q9UL25 225 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 SUFUQ9UMX1 484 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 DHDHQ9UQ10 334 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 PCDHGA9Q9Y5G4 932 aaKnown RBP-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 PCDHGA8Q9Y5G5 932 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 PCDHGA7Q9Y5G6 932 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 PCDHGA6Q9Y5G7 932 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 PCDHGA3Q9Y5H0 932 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 MRFAP1Q9Y605 127 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 LTBP4Q8N2S1 1624 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 NBASA2RRP1 2371 aa-0.93□□□□□ -2.56
RNU6-540P-201ENST00000384622 IGHV4-30-2A0A087WSY4 118 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D3DA0A087WVF3 549 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D3IA0A087WXS9 549 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D3EA0A087X179 549 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D3KA0A087X1G2 549 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 MDFIC2A0A1B0GVS7 189 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 GXYLT2A0PJZ3 443 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 BCLAF3A2AJT9 711 aaKnown RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D3BA6NDS4 549 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D3FA6NER0 549 aaPredicted RBP-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 FAM90A20PA6NIJ5 464 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 TBC1D3LB9A6J9 549 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 H0YL77 283 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 J3QRE1 110 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 VEGFDO43915 354 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 PRDM1O75626 825 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 OFD1O75665 1012 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 REC8O95072 547 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 CBX6O95503 412 aa-0.94□□□□□ -2.56
RNU6-540P-201ENST00000384622 C6orf47O95873 294 aa-0.94□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms