RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 GOLGA8CPA6NN73 597 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 DENRO43583 198 aaKnown RBP15.26■□□□□ 0.03
CCDC40-202ENST00000374876 RNASEH2AO75792 299 aaKnown RBP15.26■□□□□ 0.03
CCDC40-202ENST00000374876 UROSP10746 265 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 PXNP49023 591 aaPredicted RBP15.26■□□□□ 0.03
CCDC40-202ENST00000374876 CHN2P52757 468 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 ECT2LQ008S8 904 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 CSTF1Q05048 431 aaKnown RBP15.26■□□□□ 0.03
CCDC40-202ENST00000374876 FNDC3BQ53EP0 1204 aaKnown RBP15.26■□□□□ 0.03
CCDC40-202ENST00000374876 ARMC12Q5T9G4 340 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 SDE2Q6IQ49 451 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 PRMT9Q6P2P2 845 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 SYT13Q7L8C5 426 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 RETREG3Q86VR2 466 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 OR56A4Q8NGH8 313 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.26■□□□□ 0.03
CCDC40-202ENST00000374876 HOPXQ9BPY8 73 aaPredicted RBP15.26■□□□□ 0.03
CCDC40-202ENST00000374876 NUSAP1Q9BXS6 441 aaKnown RBP15.26■□□□□ 0.03
CCDC40-202ENST00000374876 FAM192AQ9GZU8 254 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 MTG2Q9H4K7 406 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 IL1RL2Q9HB29 575 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 PFDN4Q9NQP4 134 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 IL17CQ9P0M4 197 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 RAB26Q9ULW5 256 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 SLC8A2Q9UPR5 921 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 USP34Q70CQ2 3546 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 FZD6O60353 706 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 MATN4O95460 622 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 CTPS1P17812 591 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 COL9A1P20849 921 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 HMGCLP35914 325 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 PEX19P40855 299 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 CCR3P51677 355 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 AP1S1P61966 158 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 IRX1P78414 480 aaPredicted RBP15.26■□□□□ 0.03
CCDC40-202ENST00000374876 ANGPT1Q15389 498 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 TLR1Q15399 786 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 CRY1Q16526 586 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 KIAA1211LQ6NV74 962 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 SERPINA13PQ6UXR4 307 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 CYP2R1Q6VVX0 501 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 LYSMD3Q7Z3D4 306 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 SPATA19Q7Z5L4 167 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 SYVN1Q86TM6 617 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 TICAM1Q8IUC6 712 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 PAF1Q8N7H5 531 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 TMEM102Q8N9M5 508 aaPredicted RBP15.26■□□□□ 0.03
CCDC40-202ENST00000374876 ACDQ96AP0 544 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 MYO19Q96H55 970 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 MRGPRX3Q96LB0 322 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 HHIPQ96QV1 700 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 TSC22D3Q99576 134 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 TM6SF2Q9BZW4 377 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 MAGEE1Q9HCI5 957 aa15.26■□□□□ 0.03
CCDC40-202ENST00000374876 IQCF5A8MTL0 148 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 GPR39O43194 453 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 GALR2O43603 387 aaPredicted RBP15.25■□□□□ 0.03
CCDC40-202ENST00000374876 DNAJA2O60884 412 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 EPHX1P07099 455 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 ALPIP09923 528 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 PIM1P11309 404 aaPredicted RBP15.25■□□□□ 0.03
CCDC40-202ENST00000374876 HOXB2P14652 356 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 CAPN3P20807 821 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 PRDX3P30048 256 aaKnown RBP15.25■□□□□ 0.03
CCDC40-202ENST00000374876 HSPA13P48723 471 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 HK3P52790 923 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 EOGTQ5NDL2 527 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 C6orf10Q5SRN2 563 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 OGFOD2Q6N063 350 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 MAMSTRQ6ZN01 415 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 FRA10AC1Q70Z53 315 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 TRMT11Q7Z4G4 463 aaKnown RBP15.25■□□□□ 0.03
CCDC40-202ENST00000374876 DHFR2Q86XF0 187 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 MARVELD2Q8N4S9 558 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 DCAF4L2Q8NA75 395 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 EME1Q96AY2 570 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 IER2Q9BTL4 223 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 C2orf49Q9BVC5 232 aaPredicted RBP15.25■□□□□ 0.03
CCDC40-202ENST00000374876 P2RY12Q9H244 342 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 GID8Q9NWU2 228 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 MAP10Q9P2G4 905 aa15.25■□□□□ 0.03
CCDC40-202ENST00000374876 EIF2B4Q9UI10 523 aaKnown RBP15.25■□□□□ 0.03
CCDC40-202ENST00000374876 C15orf38-AP3S2A0A0A6YYH1 394 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 A0A1W2PQF6 199 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 TCRBV3S1A0A5B6 114 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 TTC34A8MYJ7 566 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 C9JVG2 144 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 H0Y858 1186 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 K7ERQ8 282 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 K7ESF4 209 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 PRMT5O14744 637 aaPredicted RBP15.24■□□□□ 0.03
CCDC40-202ENST00000374876 MAP3K13O43283 966 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 PGLSO95336 258 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 CLCN7P51798 805 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 DMWDQ09019 674 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 TGFBIQ15582 683 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 FOXB2Q5VYV0 432 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 RETSATQ6NUM9 610 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 UGT2A3Q6UWM9 527 aa15.24■□□□□ 0.03
CCDC40-202ENST00000374876 CERS6Q6ZMG9 384 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms