RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 PSME3P61289 254 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 GALNT1Q10472 559 aaPredicted RBP12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 ACAP2Q15057 778 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 CST6Q15828 149 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 ATP13A5Q4VNC0 1218 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 SETMARQ53H47 684 aaPredicted RBP12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 CTSL3PQ5NE16 218 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 CHSY3Q70JA7 882 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 TICAM1Q8IUC6 712 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 ASB9Q96DX5 294 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 DTNBP1Q96EV8 351 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 GPR21Q99679 349 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 NPAS2Q99743 824 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 MRPS26Q9BYN8 205 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 P2RY12Q9H244 342 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 GALPQ9UBC7 116 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 SUCOQ9UBS9 1254 aaKnown RBP12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 COQ6Q9Y2Z9 468 aa12.93□□□□□ -0.34
SQSTM1-201ENST00000360718 H0YJX3 145 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 LZTS3O60299 673 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 NIPSNAP2O75323 286 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 WISP3O95389 354 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 STAMBPO95630 424 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 SRFP11831 508 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 CD1EP15812 388 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 ZNF37AP17032 561 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 MRPS21P82921 87 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 TRAP1Q12931 704 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 LSAMPQ13449 338 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 TDGQ13569 410 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 TRIM25Q14258 630 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 ADRM1Q16186 407 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 SLC44A4Q53GD3 710 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 PIP5KL1Q5T9C9 394 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 ZNF776Q68DI1 518 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 PELI3Q8N2H9 469 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 NKAPQ8N5F7 415 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 TRAM1L1Q8N609 369 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 OR2T3Q8NH03 318 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 MARK4Q96L34 752 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 OAS3Q9Y6K5 1087 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 UBDO15205 165 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 IPO13O94829 963 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 JUNP05412 331 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 FAM58BPP0C7Q3 252 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 HOXB2P14652 356 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 TAS2R38P59533 333 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 CCINQ13939 588 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 PUS10Q3MIT2 529 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 FBXO43Q4G163 708 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 TMEM52BQ4KMG9 183 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 TECRLQ5HYJ1 363 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 TECPR1Q7Z6L1 1165 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 SATL1Q86VE3 508 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 RNF148Q8N7C7 305 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 CXorf40AQ8TE69 158 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 ANKRD49Q8WVL7 239 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 AP2M1Q96CW1 435 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 SGF29Q96ES7 293 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 PKP2Q99959 881 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 TRMOQ9BU70 441 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 RIOK2Q9BVS4 552 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 ZNF696Q9H7X3 374 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 MEAF6Q9HAF1 191 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 SARS2Q9NP81 518 aaKnown RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 SLC2A4RGQ9NR83 387 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 IGSF5Q9NSI5 407 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 SMOXQ9NWM0 555 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 MBD1Q9UIS9 605 aaPredicted RBP12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 PRSS21Q9Y6M0 314 aa12.92□□□□□ -0.34
SQSTM1-201ENST00000360718 IQCF5A8MTL0 148 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 CFAP99D6REC4 459 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 PSMD12O00232 456 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 AKT1P31749 480 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 MSX2P35548 267 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 DPP6P42658 865 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 IL2P60568 153 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 HENMT1Q5T8I9 393 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 AGBL4Q5VU57 503 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 PAQR3Q6TCH7 311 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 CYP2U1Q7Z449 544 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 FAM3CQ92520 227 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 SLC30A3Q99726 388 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 EFHD1Q9BUP0 239 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 FADS2P1A8MWK0 482 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 STX16-NPEPL1H3BU86 382 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 ATP6V0D1P61421 351 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 RPS14P62263 151 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 B4GALNT1Q00973 533 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 FASTKQ14296 549 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 MACC1Q6ZN28 852 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 HDDC3Q8N4P3 179 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 CLDN19Q8N6F1 224 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 RPLP0P6Q8NHW5 317 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 GANCQ8TET4 914 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 DTD2Q96FN9 168 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 CNBD2Q96M20 576 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 COQ10AQ96MF6 247 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 SLC25A23Q9BV35 468 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms