RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 THAP5Q7Z6K1 395 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 RANBP3LQ86VV4 465 aaPredicted RBP12.45□□□□□ -0.42
SDC3-201ENST00000336798 LRRC52Q8N7C0 313 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 OVCA2Q8WZ82 227 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 SCLYQ96I15 445 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 MTERF1Q99551 399 aaKnown RBP12.45□□□□□ -0.42
SDC3-201ENST00000336798 CCNB1IP1Q9NPC3 277 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 PLCL2Q9UPR0 1127 aa12.45□□□□□ -0.42
SDC3-201ENST00000336798 AKAP8O43823 692 aaKnown RBP12.44□□□□□ -0.42
SDC3-201ENST00000336798 ITGB1P05556 798 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 NCBP2P52298 156 aaKnown RBP eCLIP12.44□□□□□ -0.42
SDC3-201ENST00000336798 C1QTNF8P60827 252 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 ZFP69Q49AA0 526 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 INTS6LQ5JSJ4 861 aaKnown RBP12.44□□□□□ -0.42
SDC3-201ENST00000336798 CLEC12AQ5QGZ9 265 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 TBC1D21Q8IYX1 336 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 LPGAT1Q92604 370 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 SLC38A4Q969I6 547 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 HOPXQ9BPY8 73 aaPredicted RBP12.44□□□□□ -0.42
SDC3-201ENST00000336798 GBA3Q9H227 469 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 ERVW-1Q9UQF0 538 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 MFHAS1Q9Y4C4 1052 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 SMIM35A0A1B0GVV1 85 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 C5orf60A6NFR6 353 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 BTBD19C9JJ37 291 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 CCNKO75909 580 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 PAPSS2O95340 614 aaPredicted RBP12.44□□□□□ -0.42
SDC3-201ENST00000336798 GPD2P43304 727 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 LRP8Q14114 963 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 HFE2Q6ZVN8 426 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 FOXRED2Q8IWF2 684 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 STYXQ8WUJ0 223 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 LRTOMTQ8WZ04 291 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 BORCS5Q969J3 196 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 PCED1BQ96HM7 432 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 KXD1Q9BQD3 176 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 FGFBP2Q9BYJ0 223 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 POLR3BQ9NW08 1133 aaPredicted RBP12.44□□□□□ -0.42
SDC3-201ENST00000336798 RIPK3Q9Y572 518 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 INSIG1O15503 277 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 CCNB2O95067 398 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 NDST3O95803 873 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 PTNP21246 168 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 CCNOP22674 350 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 CAPZA1P52907 286 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 GNA12Q03113 381 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 E2F2Q14209 437 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 CAND1Q86VP6 1230 aaKnown RBP12.44□□□□□ -0.42
SDC3-201ENST00000336798 CCDC36Q8IYA8 594 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 Q8N9G6 341 aaPredicted RBP12.44□□□□□ -0.42
SDC3-201ENST00000336798 OR2T34Q8NGX1 318 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 OR2T3Q8NH03 318 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 CCDC120Q96HB5 630 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 FKBP14Q9NWM8 211 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 KLRC4O43908 158 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 PTPN2P17706 415 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 CDKN1CP49918 316 aaPredicted RBP12.44□□□□□ -0.42
SDC3-201ENST00000336798 BMT2Q1RMZ1 405 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 ODF4Q2M2E3 257 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 PLET1Q6UQ28 207 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 NCCRP1Q6ZVX7 275 aaPredicted RBP12.44□□□□□ -0.42
SDC3-201ENST00000336798 CYB5D2Q8WUJ1 264 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 DMRTB1Q96MA1 342 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 KREMEN1Q96MU8 473 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 HEPHQ9BQS7 1158 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 MED28Q9H204 178 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 TIMMDC1Q9NPL8 285 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 DNAJC28Q9NX36 388 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 ZNF221Q9UK13 617 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 STMND1H3BQB6 276 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 EIF1AYO14602 144 aaKnown RBP12.44□□□□□ -0.42
SDC3-201ENST00000336798 RHBDL3P58872 404 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 USP30Q70CQ3 517 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 SLC35G5Q96KT7 338 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 UCKL1Q9NWZ5 548 aa12.44□□□□□ -0.42
SDC3-201ENST00000336798 PRAMEF33A0A0G2JMD5 474 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 TCRBV7S2A1N4TA0A589 114 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 SLC30A4O14863 429 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 PIP5K1BO14986 540 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 PRAMEF10O60809 474 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 SNX4O95219 450 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 ALPPL2P10696 532 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 ASMTP46597 345 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 NOMO1Q15155 1222 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 SH3RF1Q7Z6J0 888 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 DQX1Q8TE96 717 aaKnown RBP12.43□□□□□ -0.42
SDC3-201ENST00000336798 SPOCK2Q92563 424 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 PIK3R3Q92569 461 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 RBM4BQ9BQ04 359 aaKnown RBP12.43□□□□□ -0.42
SDC3-201ENST00000336798 RBM4Q9BWF3 364 aaKnown RBP12.43□□□□□ -0.42
SDC3-201ENST00000336798 CENPMQ9NSP4 180 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 CCRL2O00421 344 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 PCDHGA12O60330 932 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 TRAPPC6AO75865 159 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 HSD3B2P26439 372 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 ACVR2AP27037 513 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 SPATC1Q76KD6 591 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 OR8H1Q8NGG4 311 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 HCAR2Q8TDS4 363 aa12.43□□□□□ -0.42
SDC3-201ENST00000336798 ADAP2Q9NPF8 381 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms