RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TNNI3P19429 210 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 PIK3R1P27986 724 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 GJA4P35212 333 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 IFNGR2P38484 337 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CLCNKAP51800 687 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 BNIP1Q12981 228 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CYP2U1Q7Z449 544 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ZDHHC13Q8IUH4 622 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CYP4X1Q8N118 509 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 DENND1AQ8TEH3 1009 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 PROX1Q92786 737 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 C12orf66Q96MD2 445 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 MVB12BQ9H7P6 319 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 NOL11Q9H8H0 719 aaKnown RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 IL21Q9HBE4 155 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 SCN3BQ9NY72 215 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 PRKAG3Q9UGI9 489 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 C3orf18Q9UK00 162 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 INVSQ9Y283 1065 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 PRAMEF12O95522 483 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ALPIP09923 528 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 MPC1LP0DKB6 136 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF23P17027 643 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TCN1P20061 433 aaPredicted RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CD70P32970 193 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 DNAJB13P59910 316 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 RPS14P62263 151 aaKnown RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TCEAL5Q5H9L2 206 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 DCP2Q8IU60 420 aaKnown RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 APLFQ8IW19 511 aaPredicted RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 UNC5BQ8IZJ1 945 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 DSELQ8IZU8 1212 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 GJD3Q8N144 294 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 SPPL2AQ8TCT8 520 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 RASSF5Q8WWW0 418 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 RMDN2Q96LZ7 410 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 WDR55Q9H6Y2 383 aaPredicted RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CALML5Q9NZT1 146 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ANAPC2Q9UJX6 822 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CITO14578 2027 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TMEM265A0A087WTH1 108 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 A0A1W2PQU0 124 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 HIDE1A8MVS5 230 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 FAM220BPB1ANY3 271 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 H7C0S8 307 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TOR1BO14657 336 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 OLFM2O95897 454 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CYP17A1P05093 508 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CD9P21926 228 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 STK19P49842 368 aaPredicted RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 RAB28P51157 221 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 RPS6KA3P51812 740 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 SLC7A2P52569 658 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 COPZ1P61923 177 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TMIGD1Q6UXZ0 262 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 PIGWQ7Z7B1 504 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TDHQ8IZJ6 230 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ITCHQ96J02 903 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF317Q96PQ6 595 aaPredicted RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 RNF38Q9H0F5 515 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 LINC00597Q9H2U6 94 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 IL26Q9NPH9 171 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 DDX18Q9NVP1 670 aaKnown RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 SOHLH2Q9NX45 425 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 AKAP6Q13023 2319 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 SHANK3Q9BYB0 1731 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CPSF4O95639 269 aaKnown RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 NTRK1P04629 796 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CTGFP29279 349 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TIE1P35590 1138 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CHI3L1P36222 383 aaPredicted RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 MBOAT1Q6ZNC8 495 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TMPRSS11BQ86T26 416 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ADGRG2Q8IZP9 1017 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 MIPOL1Q8TD10 442 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TWIST2Q8WVJ9 160 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 C9orf16Q9BUW7 83 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TAS2R1Q9NYW7 299 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 NDOR1Q9UHB4 597 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 DNMT3AQ9Y6K1 912 aaPredicted RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 GSAPA4D1B5 854 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 HS6ST1O60243 411 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ITPKAP23677 461 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 NUP107P57740 925 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 VAC14Q08AM6 782 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 RCN1Q15293 331 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ZNF549Q6P9A3 640 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 PGAM4Q8N0Y7 254 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 SYNPOQ8N3V7 929 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 CAMKVQ8NCB2 501 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 OR52E6Q96RD3 313 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TMEM165Q9HC07 324 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 TRNAU1APQ9NX07 287 aaKnown RBP6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ATP6V1HQ9UI12 483 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 ANGPT4Q9Y264 503 aa6.74□□□□□ -1.33
SF3B1-201ENST00000335508 DUXAA6NLW8 204 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 H0Y858 1186 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 H3BQ06 376 aaPredicted RBP6.73□□□□□ -1.33
SF3B1-201ENST00000335508 OR4F21O95013 312 aa6.73□□□□□ -1.33
SF3B1-201ENST00000335508 POU2F2P09086 479 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms