RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 METTL25Q8N6Q8 603 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 FAM71DQ8N9W8 422 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 KCT2Q8NC54 265 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 OR2A12Q8NGT7 310 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 HM13Q8TCT9 377 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SNAPC3Q92966 411 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TTYH2Q9BSA4 534 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 RNF32Q9H0A6 362 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 MRM3Q9HC36 420 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 PRDM8Q9NQV8 689 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 LRRC42Q9Y546 428 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 ERI2A8K979 691 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 CYP27B1O15528 508 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 UGT2B11O75310 529 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 EGFRP00533 1210 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 PCCAP05165 728 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 PDIA3P30101 505 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 FOXN2P32314 431 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 CRISP1P54107 249 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TAS2R41P59536 307 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 RRAS2P62070 204 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 FASTKQ14296 549 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 FAM102AQ5T9C2 384 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 CIAPIN1Q6FI81 312 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 CORO6Q6QEF8 472 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 B3GNT9Q6UX72 402 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 LRIG3Q6UXM1 1119 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 TOMM5Q8N4H5 51 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC44A3Q8N4M1 653 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 PHF10Q8WUB8 498 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 ST8SIA2Q92186 375 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF382Q96SR6 550 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 SMIM3Q9BZL3 60 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 GLT8D2Q9H1C3 349 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 BLOC1S4Q9NUP1 217 aa7.54□□□□□ -1.2
LIMCH1-201ENST00000313860 NPC1O15118 1278 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 MPPED1O15442 326 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 LRIG2O94898 1065 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 CSF2P04141 144 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ETS1P14921 441 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 PTPN4P29074 926 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 AUHQ13825 339 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 PTK6Q13882 451 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ME3Q16798 604 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ASTE1Q2TB18 679 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 KIAA0930Q6ICG6 404 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 EFCAB3Q8N7B9 438 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 MCOLN3Q8TDD5 553 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 FOXJ1Q92949 421 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 RIT1Q92963 219 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 NINJ1Q92982 152 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 C18orf8Q96DM3 657 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 PRICKLE1Q96MT3 831 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 CRB3Q9BUF7 120 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ADAM18Q9Y3Q7 739 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 PCDHA10Q9Y5I2 948 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 DNMT3AQ9Y6K1 912 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 PVALEFA0A1B0GWK0 134 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 EYA2O00167 538 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 CYP3A5P20815 502 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 NTSP30990 170 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 BUD31P41223 144 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 GPR15P49685 360 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 NR0B1P51843 470 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 FSCN1Q16658 493 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 AGAP9Q5VTM2 703 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 LEMD1Q68G75 181 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 S100A7AQ86SG5 101 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 KBTBD6Q86V97 674 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 SNX29P2Q8IUI4 249 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 THAP1Q9NVV9 213 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 CA14Q9ULX7 337 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ST3GAL5Q9UNP4 418 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 XKRYO14609 159 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ADAM10O14672 748 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 MATN3O15232 486 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 TTRP02766 147 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 CCZ1BP86790 482 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 CCZ1P86791 482 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 GLYR1Q49A26 553 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 SCGB1D4Q6XE38 83 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 RAB2BQ8WUD1 216 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 GPKOWQ92917 476 aaPredicted RBP eCLIP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 HS6ST2Q96MM7 605 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 SECISBP2Q96T21 854 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 FRMD8P1Q9BZ68 369 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 C11orf68Q9H3H3 251 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ASAH2Q9NR71 780 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 TBX22Q9Y458 520 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 KIAA0586Q9BVV6 1533 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 LAMC1P11047 1609 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 CHST10O43529 356 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 TFPTP0C1Z6 253 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 COX7A2P14406 83 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 IMPDH1P20839 514 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 BGNP21810 368 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 HOXD11P31277 338 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 SEC23BQ15437 767 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC45A4Q5BKX6 768 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 FAM26DQ5JW98 314 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms