RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 WRAP73Q9P2S5 460 aaPredicted RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 MDFIC2A0A1B0GVS7 189 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 A0A1W2PP18 115 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 TCAF2A6NFQ2 919 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 E5RJQ4 531 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ZNF195O14628 629 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 SCGB1D2O95969 90 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ADRA1BP35368 520 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 SLC5A3P53794 718 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 DCDC1P59894 354 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 EVX2Q03828 476 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 NFATC3Q12968 1075 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 OXA1LQ15070 435 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 NHSL2Q5HYW2 709 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CXorf57Q6NSI4 855 aaKnown RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 PAQR7Q86WK9 346 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CBR4Q8N4T8 237 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 INO80EQ8NBZ0 244 aaPredicted RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 OR2L2Q8NH16 312 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CPB2Q96IY4 423 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ARNT2Q9HBZ2 717 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 NEUROD4Q9HD90 331 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CHST12Q9NRB3 414 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 PACSIN3Q9UKS6 424 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ACAD8Q9UKU7 415 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 PCDHGA11Q9Y5H2 935 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 C1orf196B1AJZ1 125 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ITGB3P05106 788 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 UBA1P22314 1058 aaKnown RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 F8A1P23610 371 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 HUNKP57058 714 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 NRG1Q02297 640 aaPredicted RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 FAM183BPQ6ZVS7 135 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ZNF781Q8N8C0 355 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 POC1BQ8TC44 478 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 TFAP2BQ92481 460 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ZNF566Q969W8 418 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 C12orf66Q96MD2 445 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CCDC32Q9BV29 185 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 REEP1Q9H902 201 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 FBXO8Q9NRD0 319 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 AKAP7Q9P0M2 348 aaPredicted RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 MALT1Q9UDY8 824 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CFL2Q9Y281 166 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 DDX60LQ5H9U9 1706 aaKnown RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 ALDH4A1P30038 563 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 EMP3P54852 163 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 TOMM20Q15388 145 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 EML3Q32P44 896 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 PIK3R6Q5UE93 754 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 REP15Q6BDI9 236 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 EEPD1Q7L9B9 569 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ITIH5Q86UX2 942 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CEP97Q8IW35 865 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 PM20D2Q8IYS1 436 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 OR5K1Q8NHB7 308 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 VANGL1Q8TAA9 524 aaPredicted RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 DNAJA4Q8WW22 397 aaPredicted RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 RRNAD1Q96FB5 475 aaKnown RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 PKP2Q99959 881 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 TBL1YQ9BQ87 522 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 PRDM12Q9H4Q4 367 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 GDAP2Q9NXN4 497 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CCDC167Q9P0B6 97 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 NCKAP1Q9Y2A7 1128 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 FXYD6-FXYD2A0A087WZ82 144 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 TISP43B9A030 160 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 VPS26AO75436 327 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 LYPLA1O75608 230 aaPredicted RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 RNASEH2AO75792 299 aaKnown RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 WDPCPO95876 746 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 FGF1P05230 155 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 LCKP06239 509 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CYP2B6P20813 491 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 MECP2P51608 486 aaKnown RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 ARFIP1P53367 373 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 RAD51Q06609 339 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 NOTUMQ6P988 496 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CHRDL2Q6WN34 429 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ANKRD13BQ86YJ7 626 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 THEM5Q8N1Q8 247 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ZSCAN1Q8NBB4 408 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 DNAAF1Q8NEP3 725 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 TMEM143Q96AN5 459 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 OR2B2Q9GZK3 357 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 FXYD6Q9H0Q3 95 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 AASSQ9UDR5 926 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CD300AQ9UGN4 299 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 EVLQ9UI08 416 aaPredicted RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 CNOT6Q9ULM6 557 aaKnown RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 ADAMTS5Q9UNA0 930 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 SAMD4AQ9UPU9 718 aaKnown RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 A8MV72 311 aaPredicted RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 TOR1BO14657 336 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 STBD1O95210 358 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 CDC42P60953 191 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 NOL9Q5SY16 702 aaKnown RBP6.31□□□□□ -1.4
VPS35-201ENST00000299138 SLC27A1Q6PCB7 646 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ARHGAP36Q6ZRI8 547 aa6.31□□□□□ -1.4
VPS35-201ENST00000299138 ZCCHC23Q6ZST2 131 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms