RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 C8orf48Q96LL4 319 aa10.59□□□□□ -0.71
CD44-201ENST00000263398 YTHDF1Q9BYJ9 559 aaKnown RBP10.59□□□□□ -0.71
CD44-201ENST00000263398 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.59□□□□□ -0.71
CD44-201ENST00000263398 WWP2O00308 870 aa10.59□□□□□ -0.71
CD44-201ENST00000263398 CCNB2O95067 398 aa10.59□□□□□ -0.71
CD44-201ENST00000263398 HNMTP50135 292 aa10.59□□□□□ -0.71
CD44-201ENST00000263398 RPL26P61254 145 aaKnown RBP10.59□□□□□ -0.71
CD44-201ENST00000263398 TRIM32Q13049 653 aa10.59□□□□□ -0.71
CD44-201ENST00000263398 SIAH1Q8IUQ4 282 aa10.59□□□□□ -0.71
CD44-201ENST00000263398 COPS4Q9BT78 406 aa10.59□□□□□ -0.71
CD44-201ENST00000263398 EBPLQ9BY08 206 aa10.59□□□□□ -0.71
CD44-201ENST00000263398 GDAP2Q9NXN4 497 aa10.59□□□□□ -0.71
CD44-201ENST00000263398 ZNF282Q9UDV7 671 aaPredicted RBP10.59□□□□□ -0.71
CD44-201ENST00000263398 COL14A1Q05707 1796 aaKnown RBP10.59□□□□□ -0.71
CD44-201ENST00000263398 TBC1D3DA0A087WVF3 549 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TBC1D3IA0A087WXS9 549 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TBC1D3EA0A087X179 549 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TBC1D3KA0A087X1G2 549 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TBC1D3FA6NER0 549 aaPredicted RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 GLTPD2A6NH11 291 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TBC1D3LB9A6J9 549 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TYROBPO43914 113 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 NIPSNAP2O75323 286 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 AP2A2O94973 939 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TBC1D3HP0C7X1 549 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 SAGP10523 405 aaPredicted RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 RPS24P62847 133 aaKnown RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 SCN1BQ07699 218 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 KLF1Q13351 362 aaPredicted RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 TBC1D3GQ6DHY5 549 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TBC1D3CQ6IPX1 549 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 EPGNQ6UW88 154 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 DLK2Q6UY11 383 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TBC1D3Q8IZP1 549 aaPredicted RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 FAM98AQ8NCA5 519 aaKnown RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 DUSP26Q9BV47 211 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TMEM27Q9HBJ8 222 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 ZIM2Q9NZV7 527 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 MBD2Q9UBB5 411 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 ZDHHC2Q9UIJ5 367 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 OAZ3Q9UMX2 235 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 ARHGEF33A8MVX0 844 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 PI15O43692 258 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 FKTNO75072 461 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 CDH1P12830 882 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 ANXA8P13928 327 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 RHDQ02161 417 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 GALNT2Q10471 571 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 IRAK1BP1Q5VVH5 260 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 FBXL22Q6P050 247 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 PARGQ86W56 976 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 RGL4Q8IZJ4 473 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 PHTF2Q8N3S3 785 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 C2orf73Q8N5S3 287 aaPredicted RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 FBXO22Q8NEZ5 403 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 NPY6RQ99463 290 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 CGREF1Q99674 301 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 ABHD14A-ACY1A0A1B0GW23 586 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 PPEF2O14830 753 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TP73O15350 636 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 NFATC1O95644 943 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 MTHFD1P11586 935 aaKnown RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 PRPS1L1P21108 318 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TGFBR2P37173 567 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 ZFP69Q49AA0 526 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 C5orf22Q49AR2 442 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 ATXN7L2Q5T6C5 722 aaPredicted RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 ANO7Q6IWH7 933 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 KLHL35Q6PF15 583 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 HFE2Q6ZVN8 426 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 CCDC80Q76M96 950 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 OAFQ86UD1 273 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 PQLC3Q8N755 202 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 DEFB118Q96PH6 123 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 ZNF347Q96SE7 839 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 MCUBQ9NWR8 336 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 CALML5Q9NZT1 146 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 SIRPGQ9P1W8 387 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 SIX4Q9UIU6 781 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 SCN11AQ9UI33 1791 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 FAM92AA1XBS5 289 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 ZNF487B1APH4 448 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 ARPC2O15144 300 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 KCNE1P15382 129 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 CCR10P46092 362 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 YAP1P46937 504 aaKnown RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 UTS2BQ765I0 119 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 TRPV3Q8NET8 790 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 RFKQ969G6 155 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 C11orf24Q96F05 449 aaPredicted RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 KLHL32Q96NJ5 620 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 RNF39Q9H2S5 420 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 POLE3Q9NRF9 147 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 CD84Q9UIB8 345 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 LRRC42Q9Y546 428 aa10.58□□□□□ -0.72
CD44-201ENST00000263398 OAS3Q9Y6K5 1087 aaKnown RBP10.58□□□□□ -0.72
CD44-201ENST00000263398 LRRC37A3O60309 1634 aa10.57□□□□□ -0.72
CD44-201ENST00000263398 ILVBLA1L0T0 632 aa10.57□□□□□ -0.72
CD44-201ENST00000263398 ZNF99A8MXY4 864 aaPredicted RBP10.57□□□□□ -0.72
CD44-201ENST00000263398 SCN2BO60939 215 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms