RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 C9J4A7 227 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 ALAS2P22557 587 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 LMO2P25791 158 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 STARP49675 285 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 RASGEF1BQ0VAM2 473 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 RAPSNQ13702 412 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 DCAF12L1Q5VU92 463 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 THAP5Q7Z6K1 395 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 TSEN15Q8WW01 171 aaKnown RBP18.85■□□□□ 0.61
UPF1-201ENST00000262803 SLC35G5Q96KT7 338 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 MYBPHLA2RUH7 354 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 DPPA5A6NC42 116 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 PDPK1O15530 556 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 OR1F1O43749 312 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 CHIT1Q13231 466 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 PPP2R2DQ66LE6 453 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 NIPA2Q8N8Q9 360 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 TSTD1Q8NFU3 115 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 KBTBD7Q8WVZ9 684 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 NARS2Q96I59 477 aaKnown RBP18.85■□□□□ 0.61
UPF1-201ENST00000262803 FZD8Q9H461 694 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 PLEKHA1Q9HB21 404 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 SERINC1Q9NRX5 453 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 RGS10O43665 173 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 IDH3BO43837 385 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 METTL18O95568 372 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 MBOAT1Q6ZNC8 495 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 HMCESQ96FZ2 354 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 EFCAB11Q9BUY7 163 aa18.85■□□□□ 0.61
UPF1-201ENST00000262803 TFB2MQ9H5Q4 396 aaKnown RBP18.85■□□□□ 0.61
UPF1-201ENST00000262803 H3BNX3 289 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 PITPNM1O00562 1244 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 TCEA3O75764 348 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 CCNB2O95067 398 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 HCAR3P49019 387 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 CCT3P49368 545 aaKnown RBP18.84■□□□□ 0.61
UPF1-201ENST00000262803 EOGTQ5NDL2 527 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 SLC34A3Q8N130 599 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 CBR4Q8N4T8 237 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 ZNF516Q92618 1163 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 NMUR1Q9HB89 426 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 INSL6Q9Y581 213 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 SQORQ9Y6N5 450 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 SLC30A4O14863 429 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 CHP2O43745 196 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 MT-ND1P03886 318 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 TMEM220Q6QAJ8 160 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 NUS1Q96E22 293 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 GPATCH1Q9BRR8 931 aaKnown RBP18.84■□□□□ 0.61
UPF1-201ENST00000262803 MRPS30Q9NP92 439 aaKnown RBP18.84■□□□□ 0.61
UPF1-201ENST00000262803 C1orf109Q9NX04 203 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 SMPD3Q9NY59 655 aaPredicted RBP18.84■□□□□ 0.61
UPF1-201ENST00000262803 CNTN6Q9UQ52 1028 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 SAGE2PA6NJ88 616 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 TAS2R39P59534 338 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 SIM2Q14190 667 aaPredicted RBP18.84■□□□□ 0.61
UPF1-201ENST00000262803 SNX33Q8WV41 574 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 CAPSLQ8WWF8 208 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 BORCS5Q969J3 196 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 TRNT1Q96Q11 434 aaKnown RBP18.84■□□□□ 0.61
UPF1-201ENST00000262803 PDP1Q9P0J1 537 aaPredicted RBP18.84■□□□□ 0.61
UPF1-201ENST00000262803 MGAT4AQ9UM21 535 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 PCDHGB1Q9Y5G3 927 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 WASF2Q9Y6W5 498 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 PAPSS2O95340 614 aaPredicted RBP18.84■□□□□ 0.61
UPF1-201ENST00000262803 SERPINA3P01011 423 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 DNAJB1P25685 340 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 ZNF460Q14592 562 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 AMZ2Q86W34 360 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 DPEP2Q9H4A9 486 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 ALG2Q9H553 416 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 C14orf105Q9NVL8 296 aa18.84■□□□□ 0.61
UPF1-201ENST00000262803 OR2AG2A6NM03 316 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 TRIM3O75382 744 aaPredicted RBP18.83■□□□□ 0.61
UPF1-201ENST00000262803 CPN2P22792 545 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 GHRHRQ02643 423 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 BRAT1Q6PJG6 821 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 ATG14Q6ZNE5 492 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 GALNT5Q7Z7M9 940 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 C10orf82Q8WW14 230 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 SLCO2A1Q92959 643 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 EXOSC8Q96B26 276 aaKnown RBP18.83■□□□□ 0.61
UPF1-201ENST00000262803 CBFA2T3O75081 653 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 CBSLP0DN79 551 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 PSMA1P25786 263 aaKnown RBP18.83■□□□□ 0.61
UPF1-201ENST00000262803 CBSP35520 551 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 SLC9B1Q4ZJI4 515 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 PDSS1Q5T2R2 415 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 ARL10Q8N8L6 244 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 ZNF527Q8NB42 609 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 NR4A3Q92570 626 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 EQTNQ9NQ60 294 aa18.83■□□□□ 0.61
UPF1-201ENST00000262803 BCKDKO14874 412 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 GOT2P00505 430 aaKnown RBP18.83■□□□□ 0.6
UPF1-201ENST00000262803 ZNF823P16415 610 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 NR4A1P22736 598 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 HSPA7P48741 367 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 MINDY4Q4G0A6 757 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 IFI44LQ53G44 452 aa18.83■□□□□ 0.6
UPF1-201ENST00000262803 TNFAIP8L3Q5GJ75 292 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms