RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 RIN3Q8TB24 985 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 AHCYL2Q96HN2 611 aaKnown RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 MIPEPQ99797 713 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 HAUS8Q9BT25 410 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 PCBD2Q9H0N5 130 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 ZDHHC2Q9UIJ5 367 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 PCDHGA11Q9Y5H2 935 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 ATXN2Q99700 1313 aaKnown RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 A0A088AWK7 358 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 ZW10O43264 779 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 SLC22A3O75751 556 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 PDE5AO76074 875 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 PEX11BO96011 259 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 DHRS4L1P0CG22 281 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 ZNF10P21506 573 aaPredicted RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 HSD17B2P37059 387 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 CLNS1AP54105 237 aaKnown RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 GSTA3Q16772 222 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 LACTB2Q53H82 288 aaPredicted RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 ZNF678Q5SXM1 525 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 KLHL35Q6PF15 583 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 MACC1Q6ZN28 852 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 CENPLQ8N0S6 344 aaPredicted RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 RNF148Q8N7C7 305 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 CATSPER1Q8NEC5 780 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 LCN9Q8WX39 176 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 APOLD1Q96LR9 279 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 DCLRE1BQ9H816 532 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 MTF2Q9Y483 593 aaPredicted RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 POLR3HQ9Y535 204 aaPredicted RBP11.37□□□□□ -0.59
VPS4A-201ENST00000254950 HEBP2Q9Y5Z4 205 aa11.37□□□□□ -0.59
VPS4A-201ENST00000254950 KANSL1LA0AUZ9 987 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 LINC01565O15544 149 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 LAPTM5Q13571 262 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 MAPKAPK3Q16644 382 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 KIAA1161Q6NSJ0 714 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 MED27Q6P2C8 311 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 TRIML2Q8N7C3 387 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 ANKRD49Q8WVL7 239 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 HLA-CQ95604 372 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 TRIB3Q96RU7 358 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 RAB11FIP5Q9BXF6 653 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 HEBP1Q9NRV9 189 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 ATAD3AQ9NVI7 634 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 ZSWIM8A7E2V4 1837 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 THSD7BQ9C0I4 1608 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 EIF3FO00303 357 aaPredicted RBP11.36□□□□□ -0.59
VPS4A-201ENST00000254950 POU2F2P09086 479 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 MPC1LP0DKB6 136 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 RCN1Q15293 331 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 TRIP10Q15642 601 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 PTCHD3Q3KNS1 767 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 TNFAIP8L3Q5GJ75 292 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 ZNF648Q5T619 568 aaPredicted RBP11.36□□□□□ -0.59
VPS4A-201ENST00000254950 ALG1LQ6GMV1 187 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 ISCA2Q86U28 154 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 CA14Q9ULX7 337 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 OAS3Q9Y6K5 1087 aaKnown RBP11.36□□□□□ -0.59
VPS4A-201ENST00000254950 NRP2O60462 931 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 FKBP6O75344 327 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 RPL3P39023 403 aaKnown RBP11.36□□□□□ -0.59
VPS4A-201ENST00000254950 TNFRSF4P43489 277 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 ANXA11P50995 505 aaKnown RBP11.36□□□□□ -0.59
VPS4A-201ENST00000254950 PSME3P61289 254 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 SKP1P63208 163 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 KCNJ2P63252 427 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 SLC9B1Q4ZJI4 515 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 IL23RQ5VWK5 629 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 CEP68Q76N32 757 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 ADIPOR2Q86V24 386 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 DTD2Q96FN9 168 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 DPEP2Q9H4A9 486 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 THAP10Q9P2Z0 257 aaPredicted RBP11.36□□□□□ -0.59
VPS4A-201ENST00000254950 PRKAB1Q9Y478 270 aa11.36□□□□□ -0.59
VPS4A-201ENST00000254950 FKBP9O95302 570 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 PRLP01236 227 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 NDUFS1P28331 727 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 GABRB3P28472 473 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 CHI3L1P36222 383 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 HNF4AP41235 474 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 EIF4EBP2Q13542 120 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 TIGD2Q4W5G0 525 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 KRT80Q6KB66 452 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 AGTRAPQ6RW13 159 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 CHSY3Q70JA7 882 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 FKBP9P1Q75LS8 142 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 SPRED2Q7Z698 418 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 CRIPAKQ8N1N5 446 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 TMEM132CQ8N3T6 1108 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 ZNF655Q8N720 491 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 HCAR2Q8TDS4 363 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 SPDL1Q96EA4 605 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 TSSK3Q96PN8 268 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 LENG8Q96PV6 779 aaPredicted RBP11.35□□□□□ -0.59
VPS4A-201ENST00000254950 SLC17A9Q9BYT1 436 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 KCNK6Q9Y257 313 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 RALGAPA2Q2PPJ7 1873 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 TMEM233B4DJY2 109 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 H7C0S8 307 aa11.35□□□□□ -0.59
VPS4A-201ENST00000254950 MATN2O00339 956 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms