RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 EID2BQ96D98 161 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 CASD1Q96PB1 797 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 MAGEE1Q9HCI5 957 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 ZFP14Q9HCL3 533 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 KLQ9UEF7 1012 aa18.38■□□□□ 0.53
CPSF3-201ENST00000238112 ELOVL7A1L3X0 281 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 C16orf96A6NNT2 1141 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 H0Y626 953 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 ULK1O75385 1050 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 TRIM16O95361 564 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 IL6P05231 212 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 DGKAP23743 735 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 NFATC3Q12968 1075 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 BNIP3Q12983 259 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 TUBA3CQ13748 450 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 ATXN7L2Q5T6C5 722 aaPredicted RBP18.37■□□□□ 0.53
CPSF3-201ENST00000238112 ARMC12Q5T9G4 340 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 FKBP9P1Q75LS8 142 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 R3HCC1LQ7Z5L2 792 aaKnown RBP18.37■□□□□ 0.53
CPSF3-201ENST00000238112 GALNT13Q8IUC8 556 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 SVOPLQ8N434 492 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 LIX1Q8N485 282 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 FBXO22Q8NEZ5 403 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 CCDC97Q96F63 343 aaPredicted RBP18.37■□□□□ 0.53
CPSF3-201ENST00000238112 GLT1D1Q96MS3 346 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 BOCQ9BWV1 1114 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 ACTR8Q9H981 624 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 SMURF2Q9HAU4 748 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 TBCCD1Q9NVR7 557 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 FAM118AQ9NWS6 357 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 FCF1Q9Y324 198 aaKnown RBP18.37■□□□□ 0.53
CPSF3-201ENST00000238112 FZD6O60353 706 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 SEC14L2O76054 403 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 HNRNPCP07910 306 aaKnown RBP eCLIP18.37■□□□□ 0.53
CPSF3-201ENST00000238112 RPS3P23396 243 aaKnown RBP eCLIP18.37■□□□□ 0.537e-7■■■■□ 25.3
CPSF3-201ENST00000238112 CRHBPP24387 322 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 GDF5P43026 501 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 GNPDA1P46926 289 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 IST1P53990 364 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 HMGCS1Q01581 520 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 SMU1Q2TAY7 513 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 SGO1Q5FBB7 561 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 SPANXN4Q5MJ08 99 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 ANKRD26P1Q6NSI1 321 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 XKR5Q6UX68 686 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 Q6ZNX1 250 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 ZNF554Q86TJ5 538 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 PAF1Q8N7H5 531 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 SLC22A17Q8WUG5 538 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 SNRNP27Q8WVK2 155 aaKnown RBP18.37■□□□□ 0.53
CPSF3-201ENST00000238112 MYO19Q96H55 970 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 TBCDQ9BTW9 1192 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 CD244Q9BZW8 370 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 FAIMQ9NVQ4 179 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 INVSQ9Y283 1065 aa18.37■□□□□ 0.53
CPSF3-201ENST00000238112 CXCR6O00574 342 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 SEC22BO75396 215 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 SLC25A14O95258 325 aaPredicted RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 PGRP06401 933 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 ELNP15502 786 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 ZNF182P17025 639 aaPredicted RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 MZF1P28698 734 aaPredicted RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 TUFMP49411 452 aaKnown RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 SKIV2LQ15477 1246 aaKnown RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 ANKDD1AQ495B1 522 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 INO80DQ53TQ3 878 aaPredicted RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 DUS1LQ6P1R4 473 aaKnown RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 HDAC2Q92769 488 aaKnown RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 NCLNQ969V3 563 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 ACDQ96AP0 544 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 MAGED4Q96JG8 741 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 RBM4BQ9BQ04 359 aaKnown RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 RBM4Q9BWF3 364 aaKnown RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 OSBPL10Q9BXB5 764 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 ASB8Q9H765 288 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 ELAC1Q9H777 363 aaKnown RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 FARSBQ9NSD9 589 aaKnown RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 TRPM5Q9NZQ8 1165 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 EVLQ9UI08 416 aaPredicted RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 LRFN2Q9ULH4 789 aa18.36■□□□□ 0.53
CPSF3-201ENST00000238112 ZNF490Q9ULM2 529 aaPredicted RBP18.36■□□□□ 0.53
CPSF3-201ENST00000238112 ADAM12O43184 909 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 NOBOXO60393 691 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 SCELO95171 688 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 IL7RP16871 459 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 UGT1A1P22309 533 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 UGT1A4P22310 534 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 UGT1A3P35503 534 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 UGT1A5P35504 534 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 C21orf59P57076 290 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 NKG7Q16617 165 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 XAF1Q6GPH4 301 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 ZNF783Q6ZMS7 281 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 TMEM173Q86WV6 379 aaPredicted RBP18.35■□□□□ 0.53
CPSF3-201ENST00000238112 ZC3H7AQ8IWR0 971 aaKnown RBP18.35■□□□□ 0.53
CPSF3-201ENST00000238112 CLDN19Q8N6F1 224 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 BPIFB6Q8NFQ5 453 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 LKAAEAR1Q8TD35 194 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 GIPC3Q8TF64 312 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 RAB2BQ8WUD1 216 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms