RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FAIM2Q9BWQ8 316 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 IDI2Q9BXS1 227 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 EMC7Q9NPA0 242 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 LSM7Q9UK45 103 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CNTNAP4Q9C0A0 1308 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 C9IYK1 514 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 POLRMTO00411 1230 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 BET1O15155 118 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ICMTO60725 284 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CKMT1AP12532 417 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CPN2P22792 545 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RFC2P35250 354 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CDKN2CP42773 168 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 NRIP1P48552 1158 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RGS6P49758 472 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 BMXP51813 675 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ILF3Q12906 894 aaKnown RBP eCLIP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 COL19A1Q14993 1142 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 METTL11BQ5VVY1 283 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 OGFOD2Q6N063 350 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ZDHHC21Q8IVQ6 265 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SETD7Q8WTS6 366 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CANT1Q8WVQ1 401 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GATAD2BQ8WXI9 593 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 FAM84BQ96KN1 310 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 HSPA12BQ96MM6 686 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SCP2D1Q9UJQ7 156 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ZFR2Q9UPR6 939 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RRN3P2A6NIE6 340 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PER2O15055 1255 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 IFNA6P05013 189 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 BMP7P18075 431 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 NOS2P35228 1153 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 MMP12P39900 470 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PCDH1Q08174 1060 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RNF212Q495C1 297 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 MOB2Q70IA6 237 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SLC22A8Q8TCC7 542 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 KLHL5Q96PQ7 755 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 FAM129BQ96TA1 746 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 NPAS2Q99743 824 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 FEM1AQ9BSK4 669 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 POTEKPQ9BYX7 375 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GBA3Q9H227 469 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 TRIM36Q9NQ86 728 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CREBL2O60519 120 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 AP2A1O95782 977 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 DHRS4L1P0CG22 281 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 OR3A3P47888 321 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF311Q5JNZ3 666 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 FAM69AQ5T7M9 428 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SLC25A24Q6NUK1 477 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 FBXO33Q7Z6M2 555 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SLC22A15Q8IZD6 547 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CYP4X1Q8N118 509 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SLC15A4Q8N697 577 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 KCTD12Q96CX2 325 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 LGALS12Q96DT0 336 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SNX10Q9Y5X0 201 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 MYCLP1P12525 358 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 AVPR1AP37288 418 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 MARCKSL1P49006 195 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TPMTP51580 245 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SF3A2Q15428 464 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 BAK1Q16611 211 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ZRANB3Q5FWF4 1079 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF697Q5TEC3 545 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 GADL1Q6ZQY3 521 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 KCNH7Q9NS40 1196 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 NOCTQ9UK39 431 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TBC1D24Q9ULP9 559 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 MINPP1Q9UNW1 487 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 NUBP2Q9Y5Y2 271 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 A0A0U1RQJ8 604 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 M0QYT0 321 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 NDST3O95803 873 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 MT-ND2P03891 347 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 MAGEA6P43360 314 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 PLK1P53350 603 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 RAB8AP61006 207 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 APOFQ13790 326 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CYP2A13Q16696 494 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 LRRN1Q6UXK5 716 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CHSY3Q70JA7 882 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 BEND5Q7L4P6 421 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TMBIM1Q969X1 311 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 FBXO8Q9NRD0 319 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ROBO2Q9HCK4 1378 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 JRKO75564 520 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ZMPSTE24O75844 475 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 PAK4O96013 591 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CRKLP46109 303 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CLK3P49761 638 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TSPAN5P62079 268 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF484Q5JVG2 852 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF567Q8N184 647 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 PIAS4Q8N2W9 510 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TPD52L3Q96J77 140 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 PCDHB18PQ96TA0 734 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CEP41Q9BYV8 373 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms