RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 USP39Q53GS9 565 aaKnown RBP11.53□□□□□ -0.56
CLN6-223ENST00000637823 ZNF678Q5SXM1 525 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 GKAP1Q5VSY0 366 aaPredicted RBP11.53□□□□□ -0.56
CLN6-223ENST00000637823 CRTC3Q6UUV7 619 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 UBE2R2Q712K3 238 aaPredicted RBP11.53□□□□□ -0.56
CLN6-223ENST00000637823 CRLF3Q8IUI8 442 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 RASGRP3Q8IV61 690 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 OXR1Q8N573 874 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 PTGR2Q8N8N7 351 aaPredicted RBP11.53□□□□□ -0.56
CLN6-223ENST00000637823 CADM4Q8NFZ8 388 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 MCOLN3Q8TDD5 553 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 SKA2Q8WVK7 121 aaPredicted RBP11.53□□□□□ -0.56
CLN6-223ENST00000637823 BIRC7Q96CA5 298 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 FOPNLQ96NB1 174 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 MYOCQ99972 504 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 SLC12A9Q9BXP2 914 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 ERVK-6Q9BXR3 956 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 DPEP2Q9H4A9 486 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 ZNF395Q9H8N7 513 aaPredicted RBP11.53□□□□□ -0.56
CLN6-223ENST00000637823 COG4Q9H9E3 785 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 EBF2Q9HAK2 575 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 PARVBQ9HBI1 364 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 CYP4F12Q9HCS2 524 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 DLGAP2Q9P1A6 1054 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 GULP1Q9UBP9 304 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 TSR3Q9UJK0 312 aaKnown RBP11.53□□□□□ -0.56
CLN6-223ENST00000637823 ADAMTS6Q9UKP5 1117 aa11.53□□□□□ -0.56
CLN6-223ENST00000637823 LRP4O75096 1905 aa11.52□□□□□ -0.56
CLN6-223ENST00000637823 THADAQ6YHU6 1953 aa11.52□□□□□ -0.56
CLN6-223ENST00000637823 A0A1W2PPC4 97 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 METTL12A8MUP2 240 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 K7ESF4 209 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 TNFRSF10CO14798 259 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 FFAR2O15552 330 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 SNX3O60493 162 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 PSIP1O75475 530 aaKnown RBP11.52□□□□□ -0.57
CLN6-223ENST00000637823 FUCA1P04066 466 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 TROVE2P10155 538 aaKnown RBP eCLIP11.52□□□□□ -0.57
CLN6-223ENST00000637823 VCLP18206 1134 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 CYP2A7P20853 494 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 HTR1BP28222 390 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 RABIFP47224 123 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 PREPP48147 710 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 PXNP49023 591 aaPredicted RBP11.52□□□□□ -0.57
CLN6-223ENST00000637823 RPIAP49247 311 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 GALNT1Q10472 559 aaPredicted RBP11.52□□□□□ -0.57
CLN6-223ENST00000637823 ABRQ12979 859 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 SETDB1Q15047 1291 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 PYCR3Q53H96 274 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 UNC50Q53HI1 259 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 METRNLQ641Q3 311 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 CWF19L1Q69YN2 538 aaKnown RBP11.52□□□□□ -0.57
CLN6-223ENST00000637823 SULT1C3Q6IMI6 304 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 SLC36A4Q6YBV0 504 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 GCNT7Q6ZNI0 430 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 SPATA21Q7Z572 469 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 ABI3BPQ7Z7G0 1075 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 GALNT13Q8IUC8 556 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 ABCA7Q8IZY2 2146 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 FAM160A2Q8N612 972 aaPredicted RBP11.52□□□□□ -0.57
CLN6-223ENST00000637823 FRMD1Q8N878 549 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 TMEM145Q8NBT3 493 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 PDPRQ8NCN5 879 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 OR56A4Q8NGH8 313 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 DLG3Q92796 817 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 SPACA7Q96KW9 195 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 WDR92Q96MX6 357 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 NECAB3Q96P71 396 aaPredicted RBP11.52□□□□□ -0.57
CLN6-223ENST00000637823 TMEM237Q96Q45 408 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 SORT1Q99523 831 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 TIMM29Q9BSF4 260 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 TRMOQ9BU70 441 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 C1QTNF3Q9BXJ4 246 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 TRIM55Q9BYV6 548 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 C20orf27Q9GZN8 174 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 ILKAPQ9H0C8 392 aaPredicted RBP11.52□□□□□ -0.57
CLN6-223ENST00000637823 EML4Q9HC35 981 aaKnown RBP11.52□□□□□ -0.57
CLN6-223ENST00000637823 FAM8A1Q9UBU6 413 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 SLC23A2Q9UGH3 650 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 PTBP2Q9UKA9 531 aaKnown RBP11.52□□□□□ -0.57
CLN6-223ENST00000637823 ACSL5Q9ULC5 683 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 PDE10AQ9Y233 779 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.52□□□□□ -0.57
CLN6-223ENST00000637823 RAP2CQ9Y3L5 183 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 PRKAB1Q9Y478 270 aa11.52□□□□□ -0.57
CLN6-223ENST00000637823 TNPO3Q9Y5L0 923 aaKnown RBP11.52□□□□□ -0.57
CLN6-223ENST00000637823 TECTAO75443 2155 aa11.51□□□□□ -0.57
CLN6-223ENST00000637823 CUL9Q8IWT3 2517 aa11.51□□□□□ -0.57
CLN6-223ENST00000637823 CCDC163A0A0D9SF12 145 aa11.51□□□□□ -0.57
CLN6-223ENST00000637823 PABPN1LA6NDY0 278 aaKnown RBP11.51□□□□□ -0.57
CLN6-223ENST00000637823 DCXO43602 365 aa11.51□□□□□ -0.57
CLN6-223ENST00000637823 PI15O43692 258 aa11.51□□□□□ -0.57
CLN6-223ENST00000637823 LYPLA1O75608 230 aaPredicted RBP11.51□□□□□ -0.57
CLN6-223ENST00000637823 SUPT7LO94864 414 aa11.51□□□□□ -0.57
CLN6-223ENST00000637823 CATP04040 527 aaKnown RBP11.51□□□□□ -0.57
CLN6-223ENST00000637823 ANXA5P08758 320 aa11.51□□□□□ -0.57
CLN6-223ENST00000637823 HIST1H2AGP0C0S8 130 aaPredicted RBP11.51□□□□□ -0.57
CLN6-223ENST00000637823 AOC1P19801 751 aa11.51□□□□□ -0.57
CLN6-223ENST00000637823 HIST1H2ADP20671 130 aa11.51□□□□□ -0.57
CLN6-223ENST00000637823 PDHA2P29803 388 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms