RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZNF398Q8TD17 642 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 TFB1MQ8WVM0 346 aaKnown RBP18.87■□□□□ 0.61
CLN3-262ENST00000637699 IQCDQ96DY2 449 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 MRGPRX2Q96LB1 330 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 ACTR5Q9H9F9 607 aaPredicted RBP18.87■□□□□ 0.61
CLN3-262ENST00000637699 POMT2Q9UKY4 750 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 COLEC10Q9Y6Z7 277 aa18.87■□□□□ 0.61
CLN3-262ENST00000637699 GSAPA4D1B5 854 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 ENO4A6NNW6 628 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 CLDN1O95832 211 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 TMEM253P0C7T8 217 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 CYP2A7P20853 494 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 PREPP48147 710 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 RRADP55042 308 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 TPM4P67936 248 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 LLGL1Q15334 1064 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 NR6A1Q15406 480 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 SLC1A5Q15758 541 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 KYNUQ16719 465 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 PLEKHN1Q494U1 663 aaPredicted RBP18.86■□□□□ 0.61
CLN3-262ENST00000637699 MFSD7Q6UXD7 560 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 CFAP206Q8IYR0 622 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 TCTN2Q96GX1 697 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 OXNAD1Q96HP4 312 aaPredicted RBP18.86■□□□□ 0.61
CLN3-262ENST00000637699 RMDN2Q96LZ7 410 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 SLC7A5P2Q9GIP4 190 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 C1GALT1Q9NS00 363 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 SMOXQ9NWM0 555 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 KLHL8Q9P2G9 620 aaPredicted RBP18.86■□□□□ 0.61
CLN3-262ENST00000637699 ERRFI1Q9UJM3 462 aaPredicted RBP18.86■□□□□ 0.61
CLN3-262ENST00000637699 SEC16AO15027 2179 aa18.86■□□□□ 0.61
CLN3-262ENST00000637699 STX7O15400 261 aaKnown RBP18.85■□□□□ 0.61
CLN3-262ENST00000637699 PRAMEF1O95521 474 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 PECAM1P16284 738 aaPredicted RBP18.85■□□□□ 0.61
CLN3-262ENST00000637699 DCTP40126 519 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 NR2C2P49116 596 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 ZNF789Q5FWF6 425 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 BZW1Q7L1Q6 419 aaKnown RBP18.85■□□□□ 0.61
CLN3-262ENST00000637699 PID1Q7Z2X4 250 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 DAAM2Q86T65 1068 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 CISD2Q8N5K1 135 aaKnown RBP18.85■□□□□ 0.61
CLN3-262ENST00000637699 LILRA3Q8N6C8 439 aaPredicted RBP18.85■□□□□ 0.61
CLN3-262ENST00000637699 SNRNP40Q96DI7 357 aaKnown RBP18.85■□□□□ 0.61
CLN3-262ENST00000637699 SGSM3Q96HU1 749 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 SMAD5Q99717 465 aaKnown RBP18.85■□□□□ 0.61
CLN3-262ENST00000637699 KLHL25Q9H0H3 589 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 SRMSQ9H3Y6 488 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 SERTAD3Q9UJW9 196 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 HYOU1Q9Y4L1 999 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 LRBAP50851 2863 aa18.85■□□□□ 0.61
CLN3-262ENST00000637699 ATXN8OSP0DMR3 200 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 NDUFS1P28331 727 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 PRDX3P30048 256 aaKnown RBP18.84■□□□□ 0.61
CLN3-262ENST00000637699 OTX2P32243 289 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 ARHGAP25P42331 645 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 LMAN1P49257 510 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 ADCY2Q08462 1091 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 NCF4Q15080 339 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 LRRC38Q5VT99 294 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 KAZNQ674X7 775 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 ZC3H18Q86VM9 953 aaKnown RBP18.84■□□□□ 0.61
CLN3-262ENST00000637699 ZNF567Q8N184 647 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 LCN9Q8WX39 176 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 FCRL5Q96RD9 977 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 FERD3LQ96RJ6 166 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 NRTNQ99748 197 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 DEF6Q9H4E7 631 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 ASB8Q9H765 288 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 SYTL2Q9HCH5 934 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 ASF1BQ9NVP2 202 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 ARL5AQ9Y689 179 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 PIKFYVEQ9Y2I7 2098 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 PCSK5Q92824 1860 aa18.84■□□□□ 0.61
CLN3-262ENST00000637699 WIPF3A6NGB9 483 aa18.83■□□□□ 0.6
CLN3-262ENST00000637699 MAP3K7O43318 606 aa18.83■□□□□ 0.6
CLN3-262ENST00000637699 CST8O60676 142 aa18.83■□□□□ 0.6
CLN3-262ENST00000637699 CBX6O95503 412 aa18.83■□□□□ 0.6
CLN3-262ENST00000637699 LDLRP01130 860 aa18.83■□□□□ 0.6
CLN3-262ENST00000637699 ST6GAL1P15907 406 aa18.83■□□□□ 0.6
CLN3-262ENST00000637699 HNRNPH3P31942 346 aaKnown RBP18.83■□□□□ 0.6
CLN3-262ENST00000637699 ASTE1Q2TB18 679 aaPredicted RBP18.83■□□□□ 0.6
CLN3-262ENST00000637699 RAB43Q86YS6 212 aa18.83■□□□□ 0.6
CLN3-262ENST00000637699 IQCKQ8N0W5 287 aa18.83■□□□□ 0.6
CLN3-262ENST00000637699 ACVR1CQ8NER5 493 aa18.83■□□□□ 0.6
CLN3-262ENST00000637699 DDX56Q9NY93 547 aaKnown RBP18.83■□□□□ 0.6
CLN3-262ENST00000637699 IFNKQ9P0W0 207 aa18.83■□□□□ 0.6
CLN3-262ENST00000637699 HEBP2Q9Y5Z4 205 aa18.83■□□□□ 0.6
CLN3-262ENST00000637699 KLHL33A6NCF5 533 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 C9J4A7 227 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 E7EQ34 232 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 MATN2O00339 956 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 BTN3A3O00478 584 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 ZNF749O43361 778 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 SGTAO43765 313 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 AGTP01019 485 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 PVRP15151 417 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 AGXTP21549 392 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 CDKN2BP42772 138 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 MPP3Q13368 585 aa18.82■□□□□ 0.6
CLN3-262ENST00000637699 TFDP2Q14188 446 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms