RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CCND3P30281 292 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 OR1E1P30953 314 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 FMO4P31512 558 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SMARCB1Q12824 385 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 GRSF1Q12849 480 aaKnown RBP eCLIP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PWP1Q13610 501 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CAPRIN1Q14444 709 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TAF1AQ15573 450 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 DGKKQ5KSL6 1271 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 OTUD3Q5T2D3 398 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 LYPLAL1Q5VWZ2 237 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 AFMIDQ63HM1 303 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 NIPAL1Q6NVV3 410 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ARHGAP36Q6ZRI8 547 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TAS2R42Q7RTR8 314 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 HDDC3Q8N4P3 179 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ZBTB8BQ8NAP8 495 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ZMIZ2Q8NF64 920 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 OR8J3Q8NGG0 315 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 OR9I1Q8NGQ6 314 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TRUB1Q8WWH5 349 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SUSD3Q96L08 255 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TBATAQ96M53 351 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ZNF382Q96SR6 550 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 EGFL8Q99944 293 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 APOL4Q9BPW4 351 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 THUMPD3Q9BV44 507 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 NPLQ9BXD5 320 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 DPY30Q9C005 99 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CEP44Q9C0F1 390 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MAGEH1Q9H213 219 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 RNF19AQ9NV58 838 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 QPCTLQ9NXS2 382 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 USE1Q9NZ43 259 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MPP6Q9NZW5 540 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MARCH2Q9P0N8 246 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 DNAJC15Q9Y5T4 150 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 NUP205Q92621 2012 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CDH23Q9H251 3354 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 A0A1W2PQH9 124 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SLC12A8A0AV02 714 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TTC24A2A3L6 582 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MROH6A6NGR9 719 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 EVPLLA8MZ36 301 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 HHLA1C9JL84 531 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 G3V2T6 193 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MSI1O43347 362 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 KDM1AO60341 852 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 WISP3O95389 354 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 IGLV3-25P01717 112 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 KRT6AP02538 564 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ESR1P03372 595 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 KRT6BP04259 564 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 F7P08709 466 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 JUNBP17275 347 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TSPAN8P19075 237 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SLC6A2P23975 617 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ARNTP27540 789 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 KRT6CP48668 564 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TMED10P49755 219 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SUOXP51687 545 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CDH15P55291 814 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 EMX2Q04743 252 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 RCAN2Q14206 197 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 RAB39AQ14964 217 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TAF12Q16514 161 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PTPRNQ16849 979 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ZRANB3Q5FWF4 1079 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SPOUT1Q5T280 376 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MANEALQ5VSG8 457 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PTRHD1Q6GMV3 140 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 C8orf82Q6P1X6 216 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 LINC00299Q6ZSB3 139 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TMEM26Q6ZUK4 368 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CARNMT1Q8N4J0 409 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PAPD5Q8NDF8 572 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 OR2T12Q8NG77 320 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 LILRB1Q8NHL6 650 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 FRS2Q8WU20 508 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 RORBQ92753 470 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TMEM125Q96AQ2 219 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 PLEKHA8Q96JA3 519 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 C8orf48Q96LL4 319 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SPON2Q9BUD6 331 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TDRD1Q9BXT4 1180 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CCDC90BQ9GZT6 254 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 CMTM6Q9NX76 183 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 KIF17Q9P2E2 1029 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 ZMAT5Q9UDW3 170 aaKnown RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 LIMD1Q9UGP4 676 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SFMBT1Q9UHJ3 866 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 EDARQ9UNE0 448 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 MAPRE3Q9UPY8 281 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 WDR37Q9Y2I8 494 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 COQ6Q9Y2Z9 468 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TIMM22Q9Y584 194 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 NUP210Q8TEM1 1887 aaPredicted RBP3.92□□□□□ -1.78
SCN1A-214ENST00000637038 SCN10AQ9Y5Y9 1956 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 FAM149AA5PLN7 773 aa3.92□□□□□ -1.78
SCN1A-214ENST00000637038 TRIM43BA6NCK2 446 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms