RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 POP7O75817 140 aaKnown RBP14.07□□□□□ -0.16
CLN3-249ENST00000636685 KLHL18O94889 574 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 PIRTP0C851 137 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 MSL3P1P0C860 447 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 PVRP15151 417 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 HLA-DPA1P20036 260 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 AGAP20933 346 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 CA4P22748 312 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 MST1P26927 711 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 KLK7P49862 253 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 ZNF135P52742 658 aaPredicted RBP14.07□□□□□ -0.16
CLN3-249ENST00000636685 SMSP52788 366 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 JAM2P57087 298 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 POLR2FP61218 127 aaKnown RBP14.07□□□□□ -0.16
CLN3-249ENST00000636685 DCDP81605 110 aaKnown RBP14.07□□□□□ -0.16
CLN3-249ENST00000636685 DMPKQ09013 629 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 TPD52L1Q16890 204 aaPredicted RBP14.07□□□□□ -0.16
CLN3-249ENST00000636685 MRPL14Q6P1L8 145 aaKnown RBP14.07□□□□□ -0.16
CLN3-249ENST00000636685 POLNQ7Z5Q5 900 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 PSTKQ8IV42 348 aaKnown RBP14.07□□□□□ -0.16
CLN3-249ENST00000636685 OR4E2Q8NGC2 313 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 NDC1Q9BTX1 674 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 TRIM7Q9C029 511 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 LHPPQ9H008 270 aa14.07□□□□□ -0.16
CLN3-249ENST00000636685 RBM22Q9NW64 420 aaKnown RBP eCLIP14.07□□□□□ -0.16
CLN3-249ENST00000636685 GSAPA4D1B5 854 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 KCNJ13O60928 360 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 CD63P08962 238 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 CES1P23141 567 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 ARL4AP40617 200 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 CTSCP53634 463 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 CSNK1G2P78368 415 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 PRKAA1Q13131 559 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 MAMLD1Q13495 774 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 GTF2H3Q13889 308 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 FAAH2Q6GMR7 532 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 ISLR2Q6UXK2 745 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 MEX3BQ6ZN04 569 aaKnown RBP14.06□□□□□ -0.16
CLN3-249ENST00000636685 CDHR3Q6ZTQ4 885 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 TGIF2LYQ8IUE0 185 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 MCOLN2Q8IZK6 566 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 GDAP1Q8TB36 358 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 THOC3Q96J01 351 aaKnown RBP14.06□□□□□ -0.16
CLN3-249ENST00000636685 C12orf66Q96MD2 445 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 CSPG4P5Q96PW8 444 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 SPRTNQ9H040 489 aaPredicted RBP14.06□□□□□ -0.16
CLN3-249ENST00000636685 WWP1Q9H0M0 922 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 KIR3DX1Q9H7L2 352 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 NFKBIL1Q9UBC1 381 aaPredicted RBP14.06□□□□□ -0.16
CLN3-249ENST00000636685 DHCR7Q9UBM7 475 aaKnown RBP14.06□□□□□ -0.16
CLN3-249ENST00000636685 SEC14L3Q9UDX4 400 aa14.06□□□□□ -0.16
CLN3-249ENST00000636685 FLNAP21333 2647 aaKnown RBP14.06□□□□□ -0.16
CLN3-249ENST00000636685 JMJD1CQ15652 2540 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 INTS1Q8N201 2190 aaKnown RBP14.05□□□□□ -0.16
CLN3-249ENST00000636685 FAM221AA4D161 298 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 TMEM200CA6NKL6 621 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 SOCS6O14544 535 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 EPHB6O15197 1021 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 RNF8O76064 485 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 ESRRAP11474 423 aaPredicted RBP14.05□□□□□ -0.16
CLN3-249ENST00000636685 KLK2P20151 261 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 MMP11P24347 488 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 PBLDP30039 288 aaPredicted RBP14.05□□□□□ -0.16
CLN3-249ENST00000636685 PRDX3P30048 256 aaKnown RBP14.05□□□□□ -0.16
CLN3-249ENST00000636685 MFAP5Q13361 173 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 C3AR1Q16581 482 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.05□□□□□ -0.16
CLN3-249ENST00000636685 ATP13A5Q4VNC0 1218 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 RHBDD2Q6NTF9 364 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 GPR135Q8IZ08 494 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 SPDYE1Q8NFV5 336 aaPredicted RBP14.05□□□□□ -0.16
CLN3-249ENST00000636685 ADAMTS18Q8TE60 1221 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 CPLX3Q8WVH0 158 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 MAML1Q92585 1016 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 NRTNQ99748 197 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 AP1M1Q9BXS5 423 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 ENKD1Q9H0I2 346 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 PLA2G3Q9NZ20 509 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 CDC23Q9UJX2 597 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 SNRNP200O75643 2136 aaKnown RBP14.05□□□□□ -0.16
CLN3-249ENST00000636685 GTF3C1Q12789 2109 aa14.05□□□□□ -0.16
CLN3-249ENST00000636685 H3BMH7 237 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 FANCGO15287 622 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 MAP3K7O43318 606 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 HCRTR1O43613 425 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 WISP2O76076 250 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 HLA-DQB2P05538 268 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 CTSBP07858 339 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 MMP2P08253 660 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 IL1R2P27930 398 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 SERPINB6P35237 376 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 CD86P42081 329 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 ZNF165P49910 485 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 ARG2P78540 354 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 SYCP1Q15431 976 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 DPYSL2Q16555 572 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 NKAIN1Q4KMZ8 207 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 TMC3Q7Z5M5 1100 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 RASGEF1AQ8N9B8 481 aa14.04□□□□□ -0.16
CLN3-249ENST00000636685 ACBD4Q8NC06 268 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms