RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SYT12Q8IV01 421 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 TRIM48Q8IWZ4 208 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 SVOPLQ8N434 492 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 MINDY2Q8NBR6 621 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 MYDGFQ969H8 173 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 IL12RB2Q99665 862 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 MOV10Q9HCE1 1003 aaKnown RBP10.87□□□□□ -0.67
CLN3-244ENST00000636147 SDR39U1Q9NRG7 319 aaPredicted RBP10.87□□□□□ -0.67
CLN3-244ENST00000636147 TESMINQ9Y4I5 508 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 PIM1P11309 404 aaPredicted RBP10.87□□□□□ -0.67
CLN3-244ENST00000636147 DARSP14868 501 aaKnown RBP10.87□□□□□ -0.67
CLN3-244ENST00000636147 RPS12P25398 132 aaKnown RBP10.87□□□□□ -0.67
CLN3-244ENST00000636147 SCNN1AP37088 669 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 CD83Q01151 205 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 DOK6Q6PKX4 331 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 OR52B6Q8NGF0 335 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 OR13J1Q8NGT2 312 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 DSN1Q9H410 356 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 LRTM1Q9HBL6 345 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 ATP13A1Q9HD20 1204 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 ARL15Q9NXU5 204 aa10.87□□□□□ -0.67
CLN3-244ENST00000636147 PAPPAQ13219 1627 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 IGKV6D-21A0A0A0MT36 114 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 A0A1W2PQH9 124 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 SCELO95171 688 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 CTPS1P17812 591 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 ITIH1P19827 911 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 BEX3Q00994 111 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 SOX4Q06945 474 aaPredicted RBP10.86□□□□□ -0.67
CLN3-244ENST00000636147 FOXM1Q08050 763 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 CES5AQ6NT32 575 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 SYVN1Q86TM6 617 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 MFSD6LQ8IWD5 586 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 KCNC2Q96PR1 638 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 TTYH2Q9BSA4 534 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 IRF2BPLQ9H1B7 796 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 ATP13A3Q9H7F0 1226 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 ZNF451Q9Y4E5 1061 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 TNPO3Q9Y5L0 923 aaKnown RBP10.86□□□□□ -0.67
CLN3-244ENST00000636147 MAST2Q6P0Q8 1798 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 MYO10Q9HD67 2058 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 SMIM30A4D0T7 59 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 COX7A2P14406 83 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 CD1DP15813 335 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 EPB42P16452 691 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 CTSKP43235 329 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 ALDH7A1P49419 539 aaKnown RBP10.86□□□□□ -0.67
CLN3-244ENST00000636147 CLCA4Q14CN2 919 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 SMN1Q16637 294 aaKnown RBP10.86□□□□□ -0.67
CLN3-244ENST00000636147 GTDC1Q4AE62 458 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 TXNDC11Q6PKC3 985 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 C14orf80Q86SX3 495 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 TRIM69Q86WT6 500 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 GALNT12Q8IXK2 581 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 CHDHQ8NE62 594 aaPredicted RBP10.86□□□□□ -0.67
CLN3-244ENST00000636147 TRPM4Q8TD43 1214 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 TEPSINQ96N21 525 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 TMEM246Q9BRR3 403 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 MARCH2Q9P0N8 246 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 DERAQ9Y315 318 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 PRMT5O14744 637 aaPredicted RBP10.86□□□□□ -0.67
CLN3-244ENST00000636147 PER2O15055 1255 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 CREG1O75629 220 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 SNX4O95219 450 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 TBX18O95935 607 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 S1PR4O95977 384 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 CSF2P04141 144 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 FGF1P05230 155 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 C7P10643 843 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 BMP4P12644 408 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 HTR1EP28566 365 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 HTR6P50406 440 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 ATP4BP51164 291 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 EMX1Q04741 257 aaPredicted RBP10.86□□□□□ -0.67
CLN3-244ENST00000636147 ELP6Q0PNE2 266 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 HSPA14Q0VDF9 509 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 PLEKHG6Q3KR16 790 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 TRIQKQ629K1 86 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 PDE12Q6L8Q7 609 aaKnown RBP10.86□□□□□ -0.67
CLN3-244ENST00000636147 PELI3Q8N2H9 469 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 ST13P5Q8NFI4 369 aaPredicted RBP10.86□□□□□ -0.67
CLN3-244ENST00000636147 EEF1AKMT1Q8WVE0 214 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 VPS35Q96QK1 796 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 ADGRE3Q9BY15 652 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 TFB2MQ9H5Q4 396 aaKnown RBP10.86□□□□□ -0.67
CLN3-244ENST00000636147 CRTAC1Q9NQ79 661 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 FKBPLQ9UIM3 349 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 BOLA1Q9Y3E2 137 aa10.86□□□□□ -0.67
CLN3-244ENST00000636147 COL14A1Q05707 1796 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 C5orf58C9J3I9 102 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 STAU1O95793 577 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 DNTTP04053 509 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 CRATP43155 626 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 LEPRP48357 1165 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 PPP5CP53041 499 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 ZC3H12BQ5HYM0 836 aaKnown RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 ZNF57Q68EA5 555 aaPredicted RBP10.85□□□□□ -0.67
CLN3-244ENST00000636147 DESI1Q6ICB0 168 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 FAM131AQ6UXB0 335 aa10.85□□□□□ -0.67
CLN3-244ENST00000636147 C16orf59Q7L2K0 433 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms