RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 OR2A12Q8NGT7 310 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 CLHC1Q8NHS4 586 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 FOXJ1Q92949 421 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 COPS8Q99627 209 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 SPATA16Q9BXB7 569 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 COQ10BQ9H8M1 238 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 RMI1Q9H9A7 625 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 ZDHHC7Q9NXF8 308 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 KLQ9UEF7 1012 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 SLC25A13Q9UJS0 675 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 PTBP2Q9UKA9 531 aaKnown RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 HS3ST2Q9Y278 367 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 ZNF510Q9Y2H8 683 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 A0A1W2PP18 115 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 OR2AG2A6NM03 316 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 LOC730098B7Z3J9 87 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 GRM6O15303 877 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 C1SP09871 688 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 SLC2A4P14672 509 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 CD9P21926 228 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 ERVK-8P63133 956 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 RPL38P63173 70 aaKnown RBP10.43□□□□□ -0.74
CUX1-221ENST00000622516 ILF2Q12905 390 aaKnown RBP10.43□□□□□ -0.74
CUX1-221ENST00000622516 ARSIQ5FYB1 569 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 KIAA2013Q8IYS2 634 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 ROPN1LQ96C74 230 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 RHBDF1Q96CC6 855 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 PPM1MQ96MI6 270 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 LRRC3BQ96PB8 259 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 SLC29A1Q99808 456 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 ZDHHC4Q9NPG8 344 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 TRBV5-4A0A0C4DH59 114 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 AKAP10O43572 662 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 TLL1O43897 1013 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 LEFTY1O75610 366 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 ARHGEF15O94989 841 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 FGBP02675 491 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 SYN1P17600 705 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 OXTRP30559 389 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 ETV3P41162 512 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 PSMD8P48556 350 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 NEK2P51955 445 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 RPL26P61254 145 aaKnown RBP10.43□□□□□ -0.74
CUX1-221ENST00000622516 PCBP2Q15366 365 aaKnown RBP eCLIP10.43□□□□□ -0.741e-6■■■■■ 33.2
CUX1-221ENST00000622516 GSTA3Q16772 222 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 SLC22A15Q8IZD6 547 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 PDLIM5Q96HC4 596 aaKnown RBP10.43□□□□□ -0.74
CUX1-221ENST00000622516 ZFYVE19Q96K21 471 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 NR1H4Q96RI1 486 aaPredicted RBP10.43□□□□□ -0.74
CUX1-221ENST00000622516 HTATIP2Q9BUP3 242 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 EMILIN2Q9BXX0 1053 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 ACTL8Q9H568 366 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 ARL15Q9NXU5 204 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 OPTCQ9UBM4 332 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 INSL6Q9Y581 213 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 AP4B1Q9Y6B7 739 aa10.43□□□□□ -0.74
CUX1-221ENST00000622516 KIAA0355O15063 1070 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 LSM1O15116 133 aaKnown RBP10.42□□□□□ -0.74
CUX1-221ENST00000622516 MATN4O95460 622 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 RPS3P23396 243 aaKnown RBP eCLIP10.42□□□□□ -0.741e-7■■■■□ 20.3
CUX1-221ENST00000622516 NSG1P42857 185 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 MAPK8P45983 427 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 RPIAP49247 311 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 RCAN2Q14206 197 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 TBC1D25Q3MII6 688 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 HMBOX1Q6NT76 420 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 IYDQ6PHW0 289 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 HSD11B1LQ7Z5J1 315 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 C12orf76Q8N812 135 aaPredicted RBP10.42□□□□□ -0.74
CUX1-221ENST00000622516 ECHDC3Q96DC8 303 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 NUSAP1Q9BXS6 441 aaKnown RBP10.42□□□□□ -0.74
CUX1-221ENST00000622516 CD244Q9BZW8 370 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 IL23AQ9NPF7 189 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 SPHK2Q9NRA0 654 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 MRGBPQ9NV56 204 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 SUN2Q9UH99 717 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 CNOT6Q9ULM6 557 aaKnown RBP10.42□□□□□ -0.74
CUX1-221ENST00000622516 OARD1Q9Y530 152 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 PCDHGA4Q9Y5G9 962 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 TRIOO75962 3097 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 SCN8AQ9UQD0 1980 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 C7orf72A4D263 438 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 ANTXRLA6NF34 631 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 PDLIM1O00151 329 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 PGM3O95394 542 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 POP4O95707 220 aaKnown RBP10.42□□□□□ -0.74
CUX1-221ENST00000622516 PTPN2P17706 415 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 CSNK1DP48730 415 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 METAP1P53582 386 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 MTPNP58546 118 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 SELPLGQ14242 412 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 CRY1Q16526 586 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 TCEAL5Q5H9L2 206 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 OGFOD2Q6N063 350 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 GDPD4Q6W3E5 623 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 MACC1Q6ZN28 852 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 SPATA19Q7Z5L4 167 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 RNF175Q8N4F7 328 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 PDPRQ8NCN5 879 aa10.42□□□□□ -0.74
CUX1-221ENST00000622516 ATG10Q9H0Y0 220 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms