RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ICE2Q659A1 982 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 PAOXQ6QHF9 649 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 GPR150Q8NGU9 434 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 SLC6A17Q9H1V8 727 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 STOML1Q9UBI4 398 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 SLC22A14Q9Y267 594 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 STX16-NPEPL1H3BU86 382 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 AGRPO00253 132 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 C1SP09871 688 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 SLC35G4P0C7Q5 338 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 BDKRB1P46663 353 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 HMGCS1Q01581 520 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 DLX2Q07687 328 aaPredicted RBP15.45■□□□□ 0.06
CPSF1-213ENST00000620219 LDLRAP1Q5SW96 308 aa15.45■□□□□ 0.06
CPSF1-213ENST00000620219 FUBP1Q96AE4 644 aaKnown RBP15.45■□□□□ 0.06
CPSF1-213ENST00000620219 THUMPD3Q9BV44 507 aaKnown RBP15.45■□□□□ 0.06
CPSF1-213ENST00000620219 CPEB1Q9BZB8 566 aaKnown RBP15.45■□□□□ 0.06
CPSF1-213ENST00000620219 ANTXRLA6NF34 631 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 HTRA2O43464 458 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-213ENST00000620219 SORBS2O94875 1100 aaKnown RBP15.44■□□□□ 0.06
CPSF1-213ENST00000620219 CAPRIN1Q14444 709 aaKnown RBP15.44■□□□□ 0.06
CPSF1-213ENST00000620219 ANO7Q6IWH7 933 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 EPGNQ6UW88 154 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 CYP2R1Q6VVX0 501 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 LIPIQ6XZB0 460 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 ASRGL1Q7L266 308 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 SLC45A3Q96JT2 553 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 C1QTNF7Q9BXJ2 289 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 PHPT1Q9NRX4 125 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-213ENST00000620219 ZNF490Q9ULM2 529 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-213ENST00000620219 QSOX1O00391 747 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 GGT5P36269 586 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 KRT72Q14CN4 511 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 CST6Q15828 149 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 PHKG1Q16816 387 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 HSF5Q4G112 596 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-213ENST00000620219 TMPRSS11BQ86T26 416 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 OR52B6Q8NGF0 335 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 DPY30Q9C005 99 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 AASDHPPTQ9NRN7 309 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 FBXO10Q9UK96 956 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 NDUFAF1Q9Y375 327 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 OR1A2Q9Y585 309 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 OTOL1A6NHN0 477 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-213ENST00000620219 SBK3P0C264 359 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 HIST2H2ACQ16777 129 aaPredicted RBP15.44■□□□□ 0.06
CPSF1-213ENST00000620219 PRSS36Q5K4E3 855 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 HIST2H2AA3Q6FI13 130 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 HEATR4Q86WZ0 1026 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 RNPEPL1Q9HAU8 725 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 NDE1Q9NXR1 346 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 MIA3Q5JRA6 1907 aa15.44■□□□□ 0.06
CPSF1-213ENST00000620219 MAP3K13O43283 966 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 NEK2P51955 445 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 AP5B1Q2VPB7 878 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 TIGD2Q4W5G0 525 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 DNAJB14Q8TBM8 379 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 STN1Q9H668 368 aaKnown RBP15.43■□□□□ 0.06
CPSF1-213ENST00000620219 WDR41Q9HAD4 459 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 POLR3HQ9Y535 204 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-213ENST00000620219 GREM1O60565 184 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 EPHA5P54756 1037 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 AP2B1P63010 937 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 ZNF776Q68DI1 518 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-213ENST00000620219 DEFB119Q8N690 84 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 VN1R2Q8NFZ6 395 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 PTCD3Q96EY7 689 aaKnown RBP15.43■□□□□ 0.06
CPSF1-213ENST00000620219 TSSK3Q96PN8 268 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 SLC26A3P40879 764 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 CHIT1Q13231 466 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 TYSND1Q2T9J0 566 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 PTCHD3Q3KNS1 767 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 PHC3Q8NDX5 983 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 LRIG1Q96JA1 1093 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 FERD3LQ96RJ6 166 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 WDR26Q9H7D7 661 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 AKTIPQ9H8T0 292 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 POLG2Q9UHN1 485 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 PNMA8BQ9ULN7 279 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-213ENST00000620219 PPM1HQ9ULR3 514 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 KCNK6Q9Y257 313 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 CACNB4O00305 520 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-213ENST00000620219 PRDX3P30048 256 aaKnown RBP15.43■□□□□ 0.06
CPSF1-213ENST00000620219 CTSCP53634 463 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 SH3BP2P78314 561 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 CTC1Q2NKJ3 1217 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 VPS26BQ4G0F5 336 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 RIMKLBQ9ULI2 386 aa15.43■□□□□ 0.06
CPSF1-213ENST00000620219 C5orf67F2Z3F1 127 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 RGS14O43566 566 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 LMNTD1Q8N9Z9 388 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 OR4F6Q8NGB9 312 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 ARRDC3Q96B67 414 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 EID2BQ96D98 161 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 BIRC8Q96P09 236 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 GPR78Q96P69 363 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 MTERF1Q99551 399 aaKnown RBP15.42■□□□□ 0.06
CPSF1-213ENST00000620219 CCDC106Q9BWC9 280 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 PLA2G2FQ9BZM2 168 aa15.42■□□□□ 0.06
CPSF1-213ENST00000620219 DCLRE1BQ9H816 532 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms