RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CT55Q8WUE5 264 aa11.62□□□□□ -0.55
UPF3B-204ENST00000619445 UBE2Q2Q8WVN8 375 aa11.62□□□□□ -0.55
UPF3B-204ENST00000619445 CPT1BQ92523 772 aa11.62□□□□□ -0.55
UPF3B-204ENST00000619445 KRT35Q92764 455 aa11.62□□□□□ -0.55
UPF3B-204ENST00000619445 COL26A1Q96A83 441 aa11.62□□□□□ -0.55
UPF3B-204ENST00000619445 INSM2Q96T92 566 aaPredicted RBP11.62□□□□□ -0.55
UPF3B-204ENST00000619445 TBL1YQ9BQ87 522 aa11.62□□□□□ -0.55
UPF3B-204ENST00000619445 GOLPH3Q9H4A6 298 aa11.62□□□□□ -0.55
UPF3B-204ENST00000619445 ACTL8Q9H568 366 aa11.62□□□□□ -0.55
UPF3B-204ENST00000619445 SOHLH2Q9NX45 425 aa11.62□□□□□ -0.55
UPF3B-204ENST00000619445 FKBPLQ9UIM3 349 aa11.62□□□□□ -0.55
UPF3B-204ENST00000619445 G3BP2Q9UN86 482 aaKnown RBP11.62□□□□□ -0.55
UPF3B-204ENST00000619445 EPN1Q9Y6I3 576 aaPredicted RBP11.62□□□□□ -0.55
UPF3B-204ENST00000619445 SPTAN1Q13813 2472 aaKnown RBP11.61□□□□□ -0.55
UPF3B-204ENST00000619445 CDC14CA4D256 554 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 OR6C74A6NCV1 312 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 F5H423 210 aaPredicted RBP11.61□□□□□ -0.55
UPF3B-204ENST00000619445 H7C0S8 307 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 SCRG1O75711 98 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 EBLN1P0CF75 366 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 PSMB4P28070 264 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 ZNF140P52738 457 aaPredicted RBP11.61□□□□□ -0.55
UPF3B-204ENST00000619445 XIAPP98170 497 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 LAMB3Q13751 1172 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 UGT8Q16880 541 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 P3H1Q32P28 736 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 IZUMO3Q5VZ72 239 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 DET1Q7L5Y6 550 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 HPS6Q86YV9 775 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 KLHDC8BQ8IXV7 354 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 CFAP206Q8IYR0 622 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 SYCE1Q8N0S2 351 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 UBL4BQ8N7F7 174 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 LCN9Q8WX39 176 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 ALS2CR12Q96Q35 445 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 DPH2Q9BQC3 489 aaPredicted RBP11.61□□□□□ -0.55
UPF3B-204ENST00000619445 SRMSQ9H3Y6 488 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 MVB12BQ9H7P6 319 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 LRRC40Q9H9A6 602 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 ZDHHC3Q9NYG2 299 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 POMT2Q9UKY4 750 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 PCDHGB7Q9Y5F8 929 aa11.61□□□□□ -0.55
UPF3B-204ENST00000619445 MRPS18BQ9Y676 258 aaKnown RBP11.61□□□□□ -0.55
UPF3B-204ENST00000619445 USP9YO00507 2555 aaPredicted RBP11.6□□□□□ -0.55
UPF3B-204ENST00000619445 IGLV3-16A0A075B6K0 115 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 MIF4GDA9UHW6 222 aaKnown RBP11.6□□□□□ -0.55
UPF3B-204ENST00000619445 GPR39O43194 453 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 KDM1AO60341 852 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 AP2A2O94973 939 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 HBQ1P09105 142 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 RAB40ALP0C0E4 278 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 SPTBP11277 2137 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 CDH3P22223 829 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 PLOD1Q02809 727 aaPredicted RBP11.6□□□□□ -0.55
UPF3B-204ENST00000619445 SEMA5AQ13591 1074 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 PARP6Q2NL67 630 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 FAM182AQ5T1J6 154 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 ATP1A1-AS1Q5TC04 95 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 ZNF517Q6ZMY9 492 aaPredicted RBP11.6□□□□□ -0.55
UPF3B-204ENST00000619445 ARHGEF18Q6ZSZ5 1173 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 ASB18Q6ZVZ8 466 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 ZNF501Q96CX3 271 aaPredicted RBP11.6□□□□□ -0.55
UPF3B-204ENST00000619445 MRFAP1L1Q96HT8 127 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 RMDN2Q96LZ7 410 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 TTC1Q99614 292 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 C17orf62Q9BQA9 187 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 TFB2MQ9H5Q4 396 aaKnown RBP11.6□□□□□ -0.55
UPF3B-204ENST00000619445 SERTAD3Q9UJW9 196 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 FARSAQ9Y285 508 aaKnown RBP11.6□□□□□ -0.55
UPF3B-204ENST00000619445 TP53TG5Q9Y2B4 290 aa11.6□□□□□ -0.55
UPF3B-204ENST00000619445 PCDHGA9Q9Y5G4 932 aaKnown RBP11.6□□□□□ -0.55
UPF3B-204ENST00000619445 CFAP20Q9Y6A4 193 aaKnown RBP11.6□□□□□ -0.55
UPF3B-204ENST00000619445 PRRC2CQ9Y520 2896 aaKnown RBP11.6□□□□□ -0.55
UPF3B-204ENST00000619445 TRBV5-4A0A0C4DH59 114 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 TIAF1O95411 115 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 GAS8O95995 478 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 NTRK1P04629 796 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 POLBP06746 335 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 CD63P08962 238 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 KPNA2P52292 529 aaKnown RBP11.59□□□□□ -0.55
UPF3B-204ENST00000619445 PPP1CAP62136 330 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 UBAP2LQ14157 1087 aaKnown RBP11.59□□□□□ -0.55
UPF3B-204ENST00000619445 KCNAB1Q14722 419 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 LINC00523Q86TU6 105 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 HOOK3Q86VS8 718 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 OR4E2Q8NGC2 313 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 CCDC110Q8TBZ0 833 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 STYXQ8WUJ0 223 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 MR1Q95460 341 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.59□□□□□ -0.555e-7■■■■■ 55
UPF3B-204ENST00000619445 APOL2Q9BQE5 337 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 GORASP1Q9BQQ3 440 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 COG4Q9H9E3 785 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 NLE1Q9NVX2 485 aaPredicted RBP11.59□□□□□ -0.55
UPF3B-204ENST00000619445 TLK1Q9UKI8 766 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 AMFRQ9UKV5 643 aa11.59□□□□□ -0.55
UPF3B-204ENST00000619445 USP9XQ93008 2570 aaPredicted RBP11.58□□□□□ -0.56
UPF3B-204ENST00000619445 GSAPA4D1B5 854 aa11.58□□□□□ -0.56
UPF3B-204ENST00000619445 ERI2A8K979 691 aaKnown RBP11.58□□□□□ -0.56
UPF3B-204ENST00000619445 C2orf74A8MZ97 194 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms