RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TSEN34Q9BSV6 310 aaKnown RBP12.41□□□□□ -0.42
LIG1-221ENST00000613670 NUSAP1Q9BXS6 441 aaKnown RBP12.41□□□□□ -0.42
LIG1-221ENST00000613670 TDRD1Q9BXT4 1180 aaKnown RBP12.41□□□□□ -0.42
LIG1-221ENST00000613670 ZNF385DQ9H6B1 395 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 VPS51Q9UID3 782 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 RAI2Q9Y5P3 530 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 EP400Q96L91 3159 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 RPS24P62847 133 aaKnown RBP12.41□□□□□ -0.42
LIG1-221ENST00000613670 ZNF33AQ06730 810 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 TUSC3Q13454 348 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 ZNF792Q3KQV3 632 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 TTLL9Q3SXZ7 439 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 SPANXN2Q5MJ10 180 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 HMGCLL1Q8TB92 370 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 UBXN10Q96LJ8 280 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 CIPCQ9C0C6 399 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 NSUN3Q9H649 340 aaKnown RBP12.41□□□□□ -0.42
LIG1-221ENST00000613670 PADI3Q9ULW8 664 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 GIT1Q9Y2X7 761 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 PRMT5O14744 637 aaPredicted RBP12.41□□□□□ -0.42
LIG1-221ENST00000613670 SLC13A2Q13183 592 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 PWP1Q13610 501 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 UBXN11Q5T124 520 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 PIK3R6Q5UE93 754 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 PIK3C3Q8NEB9 887 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 SMOC2Q9H3U7 446 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 TRMT13Q9NUP7 481 aaKnown RBP12.41□□□□□ -0.42
LIG1-221ENST00000613670 FAM118AQ9NWS6 357 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 ERVK-18Q9QC07 812 aa12.41□□□□□ -0.42
LIG1-221ENST00000613670 A0A0D9SEW6 157 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 LCHNA4D1U4 455 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 MITFO75030 526 aaPredicted RBP12.4□□□□□ -0.42
LIG1-221ENST00000613670 WDR47O94967 919 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 UGT2B4P06133 528 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 CD36P16671 472 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 OGNP20774 298 aaKnown RBP12.4□□□□□ -0.42
LIG1-221ENST00000613670 IL10RBQ08334 325 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 CSTF3Q12996 717 aaKnown RBP12.4□□□□□ -0.42
LIG1-221ENST00000613670 GTDC1Q4AE62 458 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 MS4A13Q5J8X5 152 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 GPR153Q6NV75 609 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 GALNT10Q86SR1 603 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 HIPK1Q86Z02 1210 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 SYT12Q8IV01 421 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 PROX1Q92786 737 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 IGSF8Q969P0 613 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 CAMKK2Q96RR4 588 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 NUAK2Q9H093 628 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 ZIM2Q9NZV7 527 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 OAS3Q9Y6K5 1087 aaKnown RBP12.4□□□□□ -0.42
LIG1-221ENST00000613670 LSM1O15116 133 aaKnown RBP12.4□□□□□ -0.42
LIG1-221ENST00000613670 SLC25A14O95258 325 aaPredicted RBP12.4□□□□□ -0.42
LIG1-221ENST00000613670 PIM1P11309 404 aaPredicted RBP12.4□□□□□ -0.42
LIG1-221ENST00000613670 FDXRP22570 491 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 PRIM2P49643 509 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 RAB15P59190 212 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 FPGSQ05932 587 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 CDH18Q13634 790 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 SELPLGQ14242 412 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 TMEM53Q6P2H8 277 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 KDELC1Q6UW63 502 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 OR52J3Q8NH60 311 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 NPLOC4Q8TAT6 608 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 RSPH1Q8WYR4 309 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 ZNF599Q96NL3 588 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 ZNF347Q96SE7 839 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 TUBB1Q9H4B7 451 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 POLR3BQ9NW08 1133 aaPredicted RBP12.4□□□□□ -0.42
LIG1-221ENST00000613670 SPASTQ9UBP0 616 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 IKZF3Q9UKT9 509 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 DUSP12Q9UNI6 340 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 WDR37Q9Y2I8 494 aa12.4□□□□□ -0.42
LIG1-221ENST00000613670 KRBA1A5PL33 1030 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 PDZK1P1A8MUH7 402 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 F8W810 466 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 H0YAE9 185 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 HTR1EP28566 365 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 SLC26A3P40879 764 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 CASP9P55211 416 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 GALNT1Q10472 559 aaPredicted RBP12.4□□□□□ -0.43
LIG1-221ENST00000613670 SPCS2Q15005 226 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 KANK2Q63ZY3 851 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 AKAP14Q86UN6 197 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 AMER2Q8N7J2 671 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 TTC29Q8NA56 475 aaPredicted RBP12.4□□□□□ -0.43
LIG1-221ENST00000613670 HEPHQ9BQS7 1158 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 WDR70Q9NW82 654 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 TMEM161AQ9NX61 479 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 ERGIC3Q9Y282 383 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 CORINQ9Y5Q5 1042 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 GPR45Q9Y5Y3 372 aa12.4□□□□□ -0.43
LIG1-221ENST00000613670 GNG14A0A1W2PPG7 69 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 A8MU76 341 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 NT5C1B-RDH14C9J2C7 533 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 PSMD11O00231 422 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 PAPSS2O95340 614 aaPredicted RBP12.39□□□□□ -0.43
LIG1-221ENST00000613670 ALOX5P09917 674 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 XPAP23025 273 aaPredicted RBP12.39□□□□□ -0.43
LIG1-221ENST00000613670 SOAT1P35610 550 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 NKX2-5P52952 324 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms