RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 ATP1A1-AS1Q5TC04 95 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 PAPD7Q5XG87 772 aaKnown RBP13.26□□□□□ -0.29
TRIM28-211ENST00000597968 ASB18Q6ZVZ8 466 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 TMEM126BQ8IUX1 230 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 NXPE1Q8N323 547 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 TTC13Q8NBP0 860 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 ACTL9Q8TC94 416 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 UBE2Q2Q8WVN8 375 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 CPT1BQ92523 772 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 MIB2Q96AX9 1013 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 ELMO2Q96JJ3 720 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 SPATA13Q96N96 652 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 GORASP1Q9BQQ3 440 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 FICDQ9BVA6 458 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 OSBPL8Q9BZF1 889 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 WWP1Q9H0M0 922 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 TFB2MQ9H5Q4 396 aaKnown RBP13.26□□□□□ -0.29
TRIM28-211ENST00000597968 MVB12BQ9H7P6 319 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 POMT2Q9UKY4 750 aa13.26□□□□□ -0.29
TRIM28-211ENST00000597968 FARSAQ9Y285 508 aaKnown RBP13.26□□□□□ -0.29
TRIM28-211ENST00000597968 TRBV5-4A0A0C4DH59 114 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 OR6C74A6NCV1 312 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 GPR39O43194 453 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 BUD23O43709 281 aaKnown RBP13.25□□□□□ -0.29
TRIM28-211ENST00000597968 SGTAO43765 313 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 AP2A2O94973 939 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 CD63P08962 238 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 HBQ1P09105 142 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 FURINP09958 794 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 VARSP26640 1264 aaKnown RBP13.25□□□□□ -0.29
TRIM28-211ENST00000597968 ZNF140P52738 457 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-211ENST00000597968 EIF3EP60228 445 aaKnown RBP13.25□□□□□ -0.29
TRIM28-211ENST00000597968 PPP1CAP62136 330 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 PLOD1Q02809 727 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-211ENST00000597968 LAMB3Q13751 1172 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 TMTC1Q8IUR5 882 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 CFAP206Q8IYR0 622 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 FAM26EQ8N5C1 309 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 KRT35Q92764 455 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 PANX2Q96RD6 677 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 C17orf62Q9BQA9 187 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 HEMGNQ9BXL5 484 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 NLNQ9BYT8 704 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 PITPNM3Q9BZ71 974 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 CHRNA10Q9GZZ6 450 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 RBSNQ9H1K0 784 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 MLXIPLQ9NP71 852 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 ZDHHC3Q9NYG2 299 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 ANKMY1Q9P2S6 941 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 FKBPLQ9UIM3 349 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 TLK1Q9UKI8 766 aa13.25□□□□□ -0.29
TRIM28-211ENST00000597968 G3BP2Q9UN86 482 aaKnown RBP13.25□□□□□ -0.29
TRIM28-211ENST00000597968 GOLGA6L9A6NEM1 432 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 KCNN4O15554 427 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 PSMD3O43242 534 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 CDH3P22223 829 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 PSMB4P28070 264 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 PBLDP30039 288 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-211ENST00000597968 CA5AP35218 305 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 MARCKSL1P49006 195 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 KPNA2P52292 529 aaKnown RBP13.24□□□□□ -0.29
TRIM28-211ENST00000597968 KCNAB1Q14722 419 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 PARP6Q2NL67 630 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 DARS2Q6PI48 645 aaKnown RBP13.24□□□□□ -0.29
TRIM28-211ENST00000597968 DET1Q7L5Y6 550 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 DSELQ8IZU8 1212 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 TXLNBQ8N3L3 684 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 RMDN2Q96LZ7 410 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 TBL1YQ9BQ87 522 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 DHRS4Q9BTZ2 278 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 OR52A5Q9H2C5 316 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 SRMSQ9H3Y6 488 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 COG4Q9H9E3 785 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 SOHLH2Q9NX45 425 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 SERTAD3Q9UJW9 196 aa13.24□□□□□ -0.29
TRIM28-211ENST00000597968 CFAP20Q9Y6A4 193 aaKnown RBP13.24□□□□□ -0.29
TRIM28-211ENST00000597968 EPN1Q9Y6I3 576 aaPredicted RBP13.24□□□□□ -0.29
TRIM28-211ENST00000597968 RCCD1A6NED2 376 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 F5H423 210 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-211ENST00000597968 F8W8V4 182 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 MEN1O00255 615 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 LIN7AO14910 233 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-211ENST00000597968 LDB2O43679 373 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 KDM1AO60341 852 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 KLHL41O60662 606 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 PSMA3P25788 255 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 ACRV1P26436 265 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 PRDX3P30048 256 aaKnown RBP13.23□□□□□ -0.29
TRIM28-211ENST00000597968 ZNF75DP51815 510 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 P3H1Q32P28 736 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 ZNF658BQ4V348 819 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-211ENST00000597968 DENND5AQ6IQ26 1287 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 TMEM102Q8N9M5 508 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-211ENST00000597968 SPDYE1Q8NFV5 336 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-211ENST00000597968 OR13C4Q8NGS5 318 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 STYXQ8WUJ0 223 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 LCN9Q8WX39 176 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 MR1Q95460 341 aa13.23□□□□□ -0.29
TRIM28-211ENST00000597968 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.23□□□□□ -0.29
TRIM28-211ENST00000597968 IP6K3Q96PC2 410 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms