RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 RELTQ969Z4 430 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 ZNF830Q96NB3 372 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-210ENST00000597618 INSM2Q96T92 566 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-210ENST00000597618 SLX1AQ9BQ83 275 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 ZNF670Q9BS34 389 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 PITPNM3Q9BZ71 974 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 WWP1Q9H0M0 922 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 CBX8Q9HC52 389 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 FANCLQ9NW38 375 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 NDOR1Q9UHB4 597 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 LIMA1Q9UHB6 759 aaKnown RBP9.83□□□□□ -0.84
TRIM28-210ENST00000597618 IP6K2Q9UHH9 426 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 ITGB1BP2Q9UKP3 347 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 ACSL5Q9ULC5 683 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 CSAG2Q9Y5P2 127 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 COLEC10Q9Y6Z7 277 aa9.83□□□□□ -0.84
TRIM28-210ENST00000597618 SVILO95425 2214 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 CNTRLQ7Z7A1 2325 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 PCNX1Q96RV3 2341 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 OR2AG2A6NM03 316 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 AGPSO00116 658 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 ST6GAL1P15907 406 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 HMGCLP35914 325 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 LMAN1P49257 510 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 ARSEP51690 589 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 OTUD4Q01804 1114 aaKnown RBP9.82□□□□□ -0.84
TRIM28-210ENST00000597618 GBE1Q04446 702 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 ZBTB17Q13105 803 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 KRT33BQ14525 404 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 TLR1Q15399 786 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 SLC14A2Q15849 920 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 ASIC2Q16515 512 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 PCSK7Q16549 785 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 HADHQ16836 314 aaKnown RBP9.82□□□□□ -0.84
TRIM28-210ENST00000597618 LONRF2Q1L5Z9 754 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 AGAP7PQ5VUJ5 663 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 TMEM220Q6QAJ8 160 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 IGFL2Q6UWQ7 119 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 BNC2Q6ZN30 1099 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-210ENST00000597618 ZNF571Q7Z3V5 609 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-210ENST00000597618 NT5DC3Q86UY8 548 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 PARP9Q8IXQ6 854 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 CNTD1Q8N815 330 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 BCORP1Q8N888 145 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 ACVR1CQ8NER5 493 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 OR4E2Q8NGC2 313 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 DNAJB14Q8TBM8 379 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 LRRN4Q8WUT4 740 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 N4BP2L2Q92802 583 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-210ENST00000597618 NACC2Q96BF6 587 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 PTERQ96BW5 349 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 IMP4Q96G21 291 aaKnown RBP9.82□□□□□ -0.84
TRIM28-210ENST00000597618 CNDP1Q96KN2 507 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 AGAP4Q96P64 663 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 NUP62CLQ9H1M0 184 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 SRMSQ9H3Y6 488 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 HAUS4Q9H6D7 363 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 BPIFA1Q9NP55 256 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 IL26Q9NPH9 171 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 OLAHQ9NV23 265 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.82□□□□□ -0.84
TRIM28-210ENST00000597618 IFT80Q9P2H3 777 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-210ENST00000597618 SUCOQ9UBS9 1254 aaKnown RBP9.82□□□□□ -0.84
TRIM28-210ENST00000597618 HEBP2Q9Y5Z4 205 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 AP1M2Q9Y6Q5 423 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 ABCA2Q9BZC7 2435 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 SPTBP11277 2137 aa9.82□□□□□ -0.84
TRIM28-210ENST00000597618 CCDC66A2RUB6 948 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 MGAT4DA6NG13 374 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 LRRC53A6NM62 1247 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 DDX3XO00571 662 aaKnown RBP eCLIP9.81□□□□□ -0.84
TRIM28-210ENST00000597618 AURKAO14965 403 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 JRKO75564 520 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 NDST3O95803 873 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 CBSLP0DN79 551 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 PYGMP11217 842 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 HTR1EP28566 365 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 PRDX3P30048 256 aaKnown RBP9.81□□□□□ -0.84
TRIM28-210ENST00000597618 CBSP35520 551 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 SPAM1P38567 509 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 SSR1P43307 286 aaKnown RBP9.81□□□□□ -0.84
TRIM28-210ENST00000597618 DCDP81605 110 aaKnown RBP9.81□□□□□ -0.84
TRIM28-210ENST00000597618 PPIDQ08752 370 aaKnown RBP9.81□□□□□ -0.84
TRIM28-210ENST00000597618 GSE1Q14687 1217 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 PDK2Q15119 407 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 PPP2R5EQ16537 467 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 FNBP1LQ5T0N5 605 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 GPRC6AQ5T6X5 926 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 PRAMEF13Q5VWM6 474 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 RHBDD2Q6NTF9 364 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 FAM151BQ6UXP7 276 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 CDHR3Q6ZTQ4 885 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 MAP7D3Q8IWC1 876 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 KCTD6Q8NC69 237 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 SPDYE1Q8NFV5 336 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-210ENST00000597618 OR2L2Q8NH16 312 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 ITLN2Q8WWU7 325 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-210ENST00000597618 LCN9Q8WX39 176 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 AP1M1Q9BXS5 423 aa9.81□□□□□ -0.84
TRIM28-210ENST00000597618 TRIM8Q9BZR9 551 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms