RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZNF75CPQ92670 426 aaPredicted RBP14.94□□□□□ -0.02
TRIM28-209ENST00000597423 PTERQ96BW5 349 aa14.94□□□□□ -0.02
TRIM28-209ENST00000597423 OR2M4Q96R27 311 aa14.94□□□□□ -0.02
TRIM28-209ENST00000597423 SLC12A9Q9BXP2 914 aa14.94□□□□□ -0.02
TRIM28-209ENST00000597423 UNKQ9C0B0 810 aaKnown RBP14.94□□□□□ -0.02
TRIM28-209ENST00000597423 RDH14Q9HBH5 336 aa14.94□□□□□ -0.02
TRIM28-209ENST00000597423 PARVBQ9HBI1 364 aa14.94□□□□□ -0.02
TRIM28-209ENST00000597423 OXSMQ9NWU1 459 aa14.94□□□□□ -0.02
TRIM28-209ENST00000597423 TRNAU1APQ9NX07 287 aaKnown RBP14.94□□□□□ -0.02
TRIM28-209ENST00000597423 NUDT4Q9NZJ9 180 aa14.94□□□□□ -0.02
TRIM28-209ENST00000597423 CD274Q9NZQ7 290 aa14.94□□□□□ -0.02
TRIM28-209ENST00000597423 SIRPGQ9P1W8 387 aa14.94□□□□□ -0.02
TRIM28-209ENST00000597423 FAM8A1Q9UBU6 413 aa14.94□□□□□ -0.02
TRIM28-209ENST00000597423 CA5BQ9Y2D0 317 aa14.94□□□□□ -0.02
TRIM28-209ENST00000597423 SPTY2D1-AS1A0A0U1RR47 76 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 GMNCA6NCL1 334 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 SUPT3HB4E1H0 165 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 H0Y8X5 98 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 TLR4O00206 839 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 SUPT3HO75486 399 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 IPO13O94829 963 aaKnown RBP14.93□□□□□ -0.02
TRIM28-209ENST00000597423 VIMP08670 466 aaKnown RBP14.93□□□□□ -0.02
TRIM28-209ENST00000597423 TDGF1P13385 188 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 GNSP15586 552 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 KCNA4P22459 653 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 LSP1P33241 339 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 AP1S2P56377 157 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 CHI3L2Q15782 390 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 ZNF528Q3MIS6 628 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 TTC19Q6DKK2 380 aaPredicted RBP14.93□□□□□ -0.02
TRIM28-209ENST00000597423 UBE2R2Q712K3 238 aaPredicted RBP14.93□□□□□ -0.02
TRIM28-209ENST00000597423 RD3Q7Z3Z2 195 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 C11orf96Q7Z7L8 435 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 TCAIMQ8N3R3 496 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 FBXO39Q8N4B4 442 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 SLC6A18Q96N87 628 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 ATOH8Q96SQ7 321 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 ORAI3Q9BRQ5 295 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 FGF22Q9HCT0 170 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 KLC4Q9NSK0 619 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 CDYLQ9Y232 598 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 DNAJC16Q9Y2G8 782 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 PRKAB1Q9Y478 270 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 OARD1Q9Y530 152 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 TNPO3Q9Y5L0 923 aaKnown RBP14.93□□□□□ -0.02
TRIM28-209ENST00000597423 DGKBQ9Y6T7 804 aa14.93□□□□□ -0.02
TRIM28-209ENST00000597423 GFYI3L273 518 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 DLX3O60479 287 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 MATN4O95460 622 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 SERPINE1P05121 402 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 ANXA5P08758 320 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 SLC35G4P0C7Q5 338 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 ACP5P13686 325 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 IMPDH1P20839 514 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 BGNP21810 368 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 BCKDHBP21953 392 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 AVPR2P30518 371 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 SERPINB5P36952 375 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 DPP6P42658 865 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 PREPP48147 710 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 RPIAP49247 311 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 CLCNKAP51800 687 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 AFF3P51826 1226 aaKnown RBP14.92□□□□□ -0.02
TRIM28-209ENST00000597423 ALDH18A1P54886 795 aaKnown RBP14.92□□□□□ -0.02
TRIM28-209ENST00000597423 C21orf59P57076 290 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 CDKL1Q00532 357 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 NFKB2Q00653 900 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 NFE2L1Q14494 772 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 PCLAFQ15004 111 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 PLA2G4EQ3MJ16 856 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 ZNF658BQ4V348 819 aaPredicted RBP14.92□□□□□ -0.02
TRIM28-209ENST00000597423 LYSMD4Q5XG99 296 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 SULT1C3Q6IMI6 304 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 UNC5DQ6UXZ4 953 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 HID1Q8IV36 788 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 PPP4R1Q8TF05 950 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 ATL1Q8WXF7 558 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 OR1E3Q8WZA6 343 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 CHMP6Q96FZ7 201 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 NSRP1Q9H0G5 558 aaKnown RBP14.92□□□□□ -0.02
TRIM28-209ENST00000597423 TM9SF3Q9HD45 589 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 THAP1Q9NVV9 213 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 ZSCAN32Q9NX65 697 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 PSD3Q9NYI0 1048 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 NCKIPSDQ9NZQ3 722 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 SLC23A2Q9UGH3 650 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 SUSD2Q9UGT4 822 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 TSR3Q9UJK0 312 aaKnown RBP14.92□□□□□ -0.02
TRIM28-209ENST00000597423 LRRK1Q38SD2 2015 aa14.92□□□□□ -0.02
TRIM28-209ENST00000597423 COL6A3P12111 3177 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 TMEM114B3SHH9 223 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 TCP11X1B4DZS4 312 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 STX16-NPEPL1H3BU86 382 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 UBXN8O00124 270 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 STX16O14662 325 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 BCAT2O15382 392 aaPredicted RBP14.91□□□□□ -0.02
TRIM28-209ENST00000597423 FFAR2O15552 330 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 KDM1AO60341 852 aa14.91□□□□□ -0.02
TRIM28-209ENST00000597423 SHOX2O60902 331 aaPredicted RBP14.91□□□□□ -0.02
TRIM28-209ENST00000597423 PSIP1O75475 530 aaKnown RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms