RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	PHF21B	Q96EK2	531 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	CDH19	Q9H159	772 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	ABCG8	Q9H221	673 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	PRSS16	Q9NQE7	514 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	SMOX	Q9NWM0	555 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	NCKIPSD	Q9NZQ3	722 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	RSL24D1	Q9UHA3	163 aa	Known RBP	15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	FADS3	Q9Y5Q0	445 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	PRUNE2	Q8WUY3	3088 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	ATG2B	Q96BY7	2078 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	UBXN8	O00124	270 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	PLK4	O00444	970 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	AREL1	O15033	823 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	KERA	O60938	352 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	HNRNPL	P14866	589 aa	Known RBP eCLIP	15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	XPA	P23025	273 aa	Predicted RBP	15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	NFKBIA	P25963	317 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	CDK9	P50750	372 aa	Known RBP	15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	IL2	P60568	153 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	TUBB3	Q13509	450 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	LPCAT4	Q643R3	524 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	RPS27L	Q71UM5	84 aa	Known RBP	15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	SLC22A9	Q8IVM8	553 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	METTL25	Q8N6Q8	603 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	CCNYL1	Q8N7R7	359 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	FUBP1	Q96AE4	644 aa	Known RBP	15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	L3HYPDH	Q96EM0	354 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	LINGO1	Q96FE5	620 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	NECTIN4	Q96NY8	510 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	FAM83D	Q9H4H8	585 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	SARS2	Q9NP81	518 aa	Known RBP	15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	MBD1	Q9UIS9	605 aa	Predicted RBP	15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	PSMD13	Q9UNM6	376 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	RAP2C	Q9Y3L5	183 aa		15.15	■□□□□ 0.02
DDX39A-209	ENST00000589318	NPEPPSL1	A6NEC2	478 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	APOD	P05090	189 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	EPHX1	P07099	455 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	FAM58BP	P0C7Q3	252 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	ZNF12	P17014	697 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	CDH2	P19022	906 aa	Predicted RBP	15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	NSG1	P42857	185 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	CCNI	Q14094	377 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	GPRC6A	Q5T6X5	926 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	UGT3A1	Q6NUS8	523 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	ERAP2	Q6P179	960 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	FBXL19	Q6PCT2	694 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	STAG3L4	Q8TBR4	150 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	PYDC1	Q8WXC3	89 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	ULK4	Q96C45	1275 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	PDLIM5	Q96HC4	596 aa	Known RBP	15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	CLPTM1L	Q96KA5	538 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	COPS8	Q99627	209 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	MRPL1	Q9BYD6	325 aa	Known RBP	15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	ILKAP	Q9H0C8	392 aa	Predicted RBP	15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	GSTO2	Q9H4Y5	243 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	ZDHHC2	Q9UIJ5	367 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	TRIOBP	Q9H2D6	2365 aa		15.14	■□□□□ 0.01
DDX39A-209	ENST00000589318	FADS2P1	A8MWK0	482 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	ZNF701	M0R085	212 aa	Predicted RBP	15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	BTN3A1	O00481	513 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	DNAJA2	O60884	412 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	SLC25A14	O95258	325 aa	Predicted RBP	15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	ELFN1	P0C7U0	828 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	ITGB6	P18564	788 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	IMPDH1	P20839	514 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	SLC5A2	P31639	672 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	HOXD12	P35452	270 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	SERPINB5	P36952	375 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	TLR1	Q15399	786 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	GRAMD1B	Q3KR37	738 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	ZNF678	Q5SXM1	525 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	ZFP1	Q6P2D0	407 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	FRMD7	Q6ZUT3	714 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	MMAA	Q8IVH4	418 aa	Known RBP	15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	ADCY4	Q8NFM4	1077 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	MAPK15	Q8TD08	544 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	SNRNP27	Q8WVK2	155 aa	Known RBP	15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	EXT2	Q93063	718 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	COX4I2	Q96KJ9	171 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	CNDP1	Q96KN2	507 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	COQ10A	Q96MF6	247 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	RIOK2	Q9BVS4	552 aa	Known RBP	15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	OSBPL6	Q9BZF3	934 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	LATS2	Q9NRM7	1088 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	DNAJC28	Q9NX36	388 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	CEPT1	Q9Y6K0	416 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	STON1	Q9Y6Q2	735 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	F5	P12259	2224 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	TMEM265	A0A087WTH1	108 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	RGSL1	A5PLK6	1076 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318		H0Y858	1186 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318		K7EQS6	105 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	PSMD11	O00231	422 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	ADRB3	P13945	408 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	PRDX6	P30041	224 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	KIR2DL1	P43626	348 aa	Predicted RBP	15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	IDH3A	P50213	366 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	HK3	P52790	923 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	COPA	P53621	1224 aa		15.13	■□□□□ 0.01
DDX39A-209	ENST00000589318	PRKAA1	Q13131	559 aa		15.13	■□□□□ 0.01

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms