RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CDH5P33151 784 aaPredicted RBP15.61■□□□□ 0.09
VPS53-218ENST00000575207 LMAN1P49257 510 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 OLIG2Q13516 323 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 RPE65Q16518 533 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 ZNF648Q5T619 568 aaPredicted RBP15.61■□□□□ 0.09
VPS53-218ENST00000575207 ATG9BQ674R7 924 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 FAM20CQ8IXL6 584 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 NDUFAF2Q8N183 169 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 CENPIQ92674 756 aaPredicted RBP15.61■□□□□ 0.09
VPS53-218ENST00000575207 SECISBP2Q96T21 854 aaKnown RBP15.61■□□□□ 0.09
VPS53-218ENST00000575207 SPSB2Q99619 263 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 TRIM51Q9BSJ1 452 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 MENTQ9BUN1 341 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 WDR54Q9H977 334 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 BEX4Q9NWD9 120 aaPredicted RBP15.61■□□□□ 0.09
VPS53-218ENST00000575207 MKL2Q9ULH7 1088 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 ASB1Q9Y576 335 aa15.61■□□□□ 0.09
VPS53-218ENST00000575207 ARID1AO14497 2285 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 A0A0J9YYE9 177 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 NPIPA5E9PKD4 350 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 FAM227AF5H4B4 570 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 ARHGEF9O43307 516 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 ASNA1O43681 348 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 FZD6O60353 706 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 TRBC1P01850 177 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 PDHA1P08559 390 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 ATXN8OSP0DMR3 200 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 FDXRP22570 491 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 DLX5P56178 289 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 ALDH6A1Q02252 535 aaKnown RBP15.6■□□□□ 0.09
VPS53-218ENST00000575207 IL10RBQ08334 325 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 SLC10A7Q0GE19 358 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 C2CD6Q53TS8 623 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 TMEM211Q6ICI0 200 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 KRBA2Q6ZNG9 492 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 CDHR3Q6ZTQ4 885 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 KBTBD2Q8IY47 623 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 GHDCQ8N2G8 530 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 CCDC110Q8TBZ0 833 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 BRIX1Q8TDN6 353 aaKnown RBP15.6■□□□□ 0.09
VPS53-218ENST00000575207 FKBP10Q96AY3 582 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 BDH2Q9BUT1 245 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 FAM83DQ9H4H8 585 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 SP110Q9HB58 689 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 DHCR7Q9UBM7 475 aaKnown RBP15.6■□□□□ 0.09
VPS53-218ENST00000575207 NPIPA1Q9UND3 350 aa15.6■□□□□ 0.09
VPS53-218ENST00000575207 OR5H15A6NDH6 313 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 SMAD7O15105 426 aaKnown RBP15.59■□□□□ 0.09
VPS53-218ENST00000575207 ZNHIT1O43257 154 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 MAP3K7O43318 606 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 ALBP02768 609 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 ST6GAL1P15907 406 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 HSPA9P38646 679 aaKnown RBP15.59■□□□□ 0.09
VPS53-218ENST00000575207 PMS1P54277 932 aaKnown RBP15.59■□□□□ 0.09
VPS53-218ENST00000575207 GALNT3Q14435 633 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 LBRQ14739 615 aaKnown RBP15.59■□□□□ 0.09
VPS53-218ENST00000575207 SLFN11Q7Z7L1 901 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 SIAH3Q8IW03 269 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 TMEM35BQ8NCS4 154 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 PWWP2AQ96N64 755 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 PITPNM3Q9BZ71 974 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 SCAND2PQ9GZW5 306 aaPredicted RBP15.59■□□□□ 0.09
VPS53-218ENST00000575207 TSPAN10Q9H1Z9 355 aaPredicted RBP15.59■□□□□ 0.09
VPS53-218ENST00000575207 DNPEPQ9ULA0 475 aa15.59■□□□□ 0.09
VPS53-218ENST00000575207 FAM170AA1A519 330 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 ASPDHA6ND91 283 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 A6NNC1 897 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 OR2B3O76000 313 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 SLC25A14O95258 325 aaPredicted RBP15.58■□□□□ 0.08
VPS53-218ENST00000575207 CLDN7O95471 211 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 PRR35P0CG20 571 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 SDC4P31431 198 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 PTPN9P43378 593 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 SPINT3P49223 89 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 DCAF7P61962 342 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 RBBP7Q16576 425 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 NKG7Q16617 165 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 CCDC40Q4G0X9 1142 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 RALGPS1Q5JS13 557 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 GJB7Q6PEY0 223 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 ARHGAP36Q6ZRI8 547 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 OVCH1Q7RTY7 1134 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 FGD2Q7Z6J4 655 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 RXFP2Q8WXD0 754 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 RND1Q92730 232 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 SPATA32Q96LK8 384 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 SLC26A1Q9H2B4 701 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 ZNF160Q9HCG1 818 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 METTL5Q9NRN9 209 aaKnown RBP15.58■□□□□ 0.08
VPS53-218ENST00000575207 FANCLQ9NW38 375 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 DTLQ9NZJ0 730 aa15.58■□□□□ 0.08
VPS53-218ENST00000575207 CPAMD8Q8IZJ3 1885 aa15.57■□□□□ 0.08
VPS53-218ENST00000575207 RGSL1A5PLK6 1076 aa15.57■□□□□ 0.08
VPS53-218ENST00000575207 MATN2O00339 956 aa15.57■□□□□ 0.08
VPS53-218ENST00000575207 ONECUT2O95948 504 aa15.57■□□□□ 0.08
VPS53-218ENST00000575207 PFKFB1P16118 471 aa15.57■□□□□ 0.08
VPS53-218ENST00000575207 VCLP18206 1134 aa15.57■□□□□ 0.08
VPS53-218ENST00000575207 POLR2CP19387 275 aaPredicted RBP15.57■□□□□ 0.08
VPS53-218ENST00000575207 RFC1P35251 1148 aaPredicted RBP15.57■□□□□ 0.08
VPS53-218ENST00000575207 PRCPP42785 496 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms