RNA–Protein interactions for RNA: ENST00000571028.1

CCDC40-205, Transcript of coiled-coil domain containing 40, humanhuman

TSL 5

Gene CCDC40, Length 593 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-205ENST00000571028 GRID2O43424 1007 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 DNAJC6O75061 913 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 IVLP07476 585 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 F7P08709 466 aaPredicted RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 ACP5P13686 325 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 GLB1P16278 677 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 PAMP19021 973 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 AK4P27144 223 aaPredicted RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 FOXN2P32314 431 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 MAGEA3P43357 314 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 ZFP36L1Q07352 338 aaKnown RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 THOC5Q13769 683 aaKnown RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 SEMA3AQ14563 771 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 DBN1Q16643 649 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 GLE1Q53GS7 698 aaKnown RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 PYCR3Q53H96 274 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 TMEM220Q6QAJ8 160 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 CENPUQ71F23 418 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 TRAPPC5Q8IUR0 188 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 ZBED8Q8IZ13 594 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 NXPE1Q8N323 547 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 RASGEF1AQ8N9B8 481 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 FBXO36Q8NEA4 188 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 DDHD1Q8NEL9 900 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 FBXO25Q8TCJ0 367 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 ART4Q93070 314 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 EBNA1BP2Q99848 306 aaKnown RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 B3GNT4Q9C0J1 378 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 L2HGDHQ9H9P8 463 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 CATSPERZQ9NTU4 200 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 C20orf96Q9NUD7 363 aaPredicted RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 ZDHHC3Q9NYG2 299 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 VPS18Q9P253 973 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 MARCH4Q9P2E8 410 aaPredicted RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 PLEKHB1Q9UF11 243 aaPredicted RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 ZC3H7BQ9UGR2 993 aaKnown RBP13.07□□□□□ -0.32
CCDC40-205ENST00000571028 RIMKLBQ9ULI2 386 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 KCNK6Q9Y257 313 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 DNAJC16Q9Y2G8 782 aa13.07□□□□□ -0.32
CCDC40-205ENST00000571028 KIF26BQ2KJY2 2108 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 RELNP78509 3460 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 ZNF891A8MT65 544 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-205ENST00000571028 CFAP99D6REC4 459 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 CD3EAPO15446 510 aaKnown RBP13.06□□□□□ -0.32
CCDC40-205ENST00000571028 VEGFDO43915 354 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 NUAK1O60285 661 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 SNX2O60749 519 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 AGFG2O95081 481 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 POLBP06746 335 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 RALBP11234 206 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 PGAM1P18669 254 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 ACRV1P26436 265 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 ACTR1BP42025 376 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 CTSCP53634 463 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 ACTR1AP61163 376 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 CTBSQ01459 385 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 ACVR1Q04771 509 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 ILF3Q12906 894 aaKnown RBP eCLIP13.06□□□□□ -0.32
CCDC40-205ENST00000571028 FASTKD3Q14CZ7 662 aaKnown RBP13.06□□□□□ -0.32
CCDC40-205ENST00000571028 INSCQ1MX18 579 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 GPR33Q49SQ1 333 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 SLC30A9Q6PML9 568 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 ZDHHC24Q6UX98 284 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 LRRTM4Q86VH4 590 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 UNC5BQ8IZJ1 945 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 BEND7Q8N7W2 519 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-205ENST00000571028 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.06□□□□□ -0.32
CCDC40-205ENST00000571028 DTX3LQ8TDB6 740 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 TTC1Q99614 292 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 ZCCHC2Q9C0B9 1178 aaKnown RBP13.06□□□□□ -0.32
CCDC40-205ENST00000571028 OSGEPL1Q9H4B0 414 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 PPANQ9NQ55 473 aaKnown RBP13.06□□□□□ -0.32
CCDC40-205ENST00000571028 FAM114A2Q9NRY5 505 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 SMOXQ9NWM0 555 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 DGKBQ9Y6T7 804 aa13.06□□□□□ -0.32
CCDC40-205ENST00000571028 USP9YO00507 2555 aaPredicted RBP13.06□□□□□ -0.32
CCDC40-205ENST00000571028 TRBV23OR9-2A0A075B6M9 112 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 ZCWPW2A0A1B0GU75 182 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 ZW10O43264 779 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 OR1I1O60431 355 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 NDUFS3O75489 264 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 USP1O94782 785 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 LIFP15018 202 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 PSMA3P25788 255 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 ARNTP27540 789 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 B4GALNT1Q00973 533 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 CAV1Q03135 178 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 LONRF1Q17RB8 773 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 HIST2H2BCQ6DN03 193 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 KIAA0930Q6ICG6 404 aaPredicted RBP13.05□□□□□ -0.32
CCDC40-205ENST00000571028 SPRED1Q7Z699 444 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 PIM3Q86V86 326 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 CLDN19Q8N6F1 224 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 FAM46DQ8NEK8 389 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 PYROXD1Q8WU10 500 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 PEX13Q92968 403 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 NKD1Q969G9 470 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 C19orf43Q9BQ61 176 aa13.05□□□□□ -0.32
CCDC40-205ENST00000571028 WDR83Q9BRX9 315 aaKnown RBP13.05□□□□□ -0.32
CCDC40-205ENST00000571028 GSDMCQ9BYG8 508 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms