RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 DPEP2Q9H4A9 486 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 COG4Q9H9E3 785 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 PARVBQ9HBI1 364 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 POLMQ9NP87 494 aaPredicted RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 TCF7L2Q9NQB0 619 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 NDE1Q9NXR1 346 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 LNPEPQ9UIQ6 1025 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 CDV3Q9UKY7 258 aaKnown RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 SLC12A4Q9UP95 1085 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 RRP15Q9Y3B9 282 aaKnown RBP7.83□□□□□ -1.16
VPS39-213ENST00000570062 TRAF6Q9Y4K3 522 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 ANGPTL3Q9Y5C1 460 aa7.83□□□□□ -1.16
VPS39-213ENST00000570062 SLC35F4A4IF30 521 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 ZNF839A8K0R7 811 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 C2CD4DB7Z1M9 353 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 H0YHG0 523 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 GFYI3L273 518 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 UBXN8O00124 270 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 CDC7O00311 574 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 AZIN1O14977 448 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 KDM1AO60341 852 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 DIAPH2O60879 1101 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 MMP20O60882 483 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 PCDH8O95206 1070 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 ESRRBO95718 433 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 RPS17P08708 135 aaKnown RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 KITP10721 976 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 UROSP10746 265 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 THRAP10827 490 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 ESRRAP11474 423 aaPredicted RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 AOC1P19801 751 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 KCNA5P22460 613 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 OXTRP30559 389 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 CCR7P32248 378 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 SCTRP47872 440 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 DGKEP52429 567 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 INHBCP55103 352 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 HSPA14Q0VDF9 509 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 GRIK2Q13002 908 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 PTPRRQ15256 657 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 SKIV2LQ15477 1246 aaKnown RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 MAPRE2Q15555 327 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 SMU1Q2TAY7 513 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 SLC44A4Q53GD3 710 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 UNC50Q53HI1 259 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 ACSBG2Q5FVE4 666 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 C10orf62Q5T681 223 aaPredicted RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 PIP5KL1Q5T9C9 394 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 PNCKQ6P2M8 343 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 FOXR1Q6PIV2 292 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 NAPRTQ6XQN6 538 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 CYHR1Q6ZMK1 362 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 LRRC70Q7Z2Q7 622 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 TMPRSS6Q8IU80 811 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 FAM9CQ8IZT9 166 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 CLDN19Q8N6F1 224 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 ZNF366Q8N895 744 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 ZNF781Q8N8C0 355 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 DENND6BQ8NEG7 585 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 ZNF483Q8TF39 744 aaPredicted RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 UBTD2Q8WUN7 234 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 ASB11Q8WXH4 323 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 PPM1EQ8WY54 764 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 SCAMP4Q969E2 229 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 KLHL29Q96CT2 875 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 SIPA1Q96FS4 1042 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 MAELQ96JY0 434 aaKnown RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 CCDC138Q96M89 665 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 GUCD1Q96NT3 240 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 LENG8Q96PV6 779 aaPredicted RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 ZNF382Q96SR6 550 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 EGFL8Q99944 293 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 HGH1Q9BTY7 390 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 RPP25Q9BUL9 199 aaKnown RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 WRAP53Q9BUR4 548 aaKnown RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 BOCQ9BWV1 1114 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 C20orf27Q9GZN8 174 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 MYLK2Q9H1R3 596 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 C1orf21Q9H246 121 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 MTG2Q9H4K7 406 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 GSTO2Q9H4Y5 243 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 SGK2Q9HBY8 427 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 PHPT1Q9NRX4 125 aaPredicted RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 RIC8BQ9NVN3 520 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 PNPOQ9NVS9 261 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.82□□□□□ -1.16
VPS39-213ENST00000570062 FBXL12Q9NXK8 326 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 CD84Q9UIB8 345 aa7.82□□□□□ -1.16
VPS39-213ENST00000570062 PTBP2Q9UKA9 531 aaKnown RBP7.82□□□□□ -1.16
VPS39-213ENST00000570062 NPEPPSL1A6NEC2 478 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 MGAT4DA6NG13 374 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 LRRC72A6NJI9 287 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 IQCF5A8MTL0 148 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 CHURC1-FNTBB4DL54 471 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 H3BQ06 376 aaPredicted RBP7.81□□□□□ -1.16
VPS39-213ENST00000570062 K7EPI3 171 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 FCHO1O14526 889 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 ZNF195O14628 629 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 KMOO15229 486 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms