RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ATP6V0E1O15342 81 aa2.55□□□□□ -2
VPS35-207ENST00000568191 CREB3O43889 395 aa2.55□□□□□ -2
VPS35-207ENST00000568191 CDC123O75794 336 aaPredicted RBP2.55□□□□□ -2
VPS35-207ENST00000568191 NXPH2O95156 264 aa2.55□□□□□ -2
VPS35-207ENST00000568191 NADKO95544 446 aaPredicted RBP2.55□□□□□ -2
VPS35-207ENST00000568191 TBX18O95935 607 aa2.55□□□□□ -2
VPS35-207ENST00000568191 NGFP01138 241 aa2.55□□□□□ -2
VPS35-207ENST00000568191 ARL3P36405 182 aa2.55□□□□□ -2
VPS35-207ENST00000568191 MAGEA11P43364 429 aa2.55□□□□□ -2
VPS35-207ENST00000568191 THOP1P52888 689 aa2.55□□□□□ -2
VPS35-207ENST00000568191 LGALS3BPQ08380 585 aa2.55□□□□□ -2
VPS35-207ENST00000568191 GPR17Q13304 367 aa2.55□□□□□ -2
VPS35-207ENST00000568191 KRT33BQ14525 404 aa2.55□□□□□ -2
VPS35-207ENST00000568191 RARS2Q5T160 578 aaKnown RBP2.55□□□□□ -2
VPS35-207ENST00000568191 SPINK14Q6IE38 97 aa2.55□□□□□ -2
VPS35-207ENST00000568191 PSRC1Q6PGN9 363 aaPredicted RBP2.55□□□□□ -2
VPS35-207ENST00000568191 CORO6Q6QEF8 472 aa2.55□□□□□ -2
VPS35-207ENST00000568191 GALNT13Q8IUC8 556 aa2.55□□□□□ -2
VPS35-207ENST00000568191 ZNF383Q8NA42 475 aa2.55□□□□□ -2
VPS35-207ENST00000568191 IL17REQ8NFR9 667 aa2.55□□□□□ -2
VPS35-207ENST00000568191 ARHGEF40Q8TER5 1519 aa2.55□□□□□ -2
VPS35-207ENST00000568191 ARHGAP45Q92619 1136 aa2.55□□□□□ -2
VPS35-207ENST00000568191 CCDC34Q96HJ3 373 aa2.55□□□□□ -2
VPS35-207ENST00000568191 DDOQ99489 341 aa2.55□□□□□ -2
VPS35-207ENST00000568191 GFI1Q99684 422 aa2.55□□□□□ -2
VPS35-207ENST00000568191 EGFL8Q99944 293 aa2.55□□□□□ -2
VPS35-207ENST00000568191 TRAF4Q9BUZ4 470 aaPredicted RBP2.55□□□□□ -2
VPS35-207ENST00000568191 HHATLQ9HCP6 504 aa2.55□□□□□ -2
VPS35-207ENST00000568191 AMACRQ9UHK6 382 aa2.55□□□□□ -2
VPS35-207ENST00000568191 TSPYL4Q9UJ04 414 aa2.55□□□□□ -2
VPS35-207ENST00000568191 CMAHPQ9Y471 501 aa2.55□□□□□ -2
VPS35-207ENST00000568191 A0A1W2PN81 502 aa2.54□□□□□ -2
VPS35-207ENST00000568191 LIPT2A6NK58 231 aa2.54□□□□□ -2
VPS35-207ENST00000568191 DNM1LO00429 736 aa2.54□□□□□ -2
VPS35-207ENST00000568191 ZNF197O14709 1029 aa2.54□□□□□ -2
VPS35-207ENST00000568191 RNASEH2AO75792 299 aaKnown RBP2.54□□□□□ -2
VPS35-207ENST00000568191 CD4P01730 458 aa2.54□□□□□ -2
VPS35-207ENST00000568191 FRMD6-AS1P0C7T7 363 aa2.54□□□□□ -2
VPS35-207ENST00000568191 CHMP24386 653 aa2.54□□□□□ -2
VPS35-207ENST00000568191 ACADLP28330 430 aa2.54□□□□□ -2
VPS35-207ENST00000568191 KRT2P35908 639 aa2.54□□□□□ -2
VPS35-207ENST00000568191 CHRNA7P36544 502 aa2.54□□□□□ -2
VPS35-207ENST00000568191 HUNKP57058 714 aa2.54□□□□□ -2
VPS35-207ENST00000568191 SNX16P57768 344 aa2.54□□□□□ -2
VPS35-207ENST00000568191 MS4A2Q01362 244 aa2.54□□□□□ -2
VPS35-207ENST00000568191 IKQ13123 557 aaPredicted RBP2.54□□□□□ -2
VPS35-207ENST00000568191 MED22Q15528 200 aa2.54□□□□□ -2
VPS35-207ENST00000568191 CTU2Q2VPK5 515 aaKnown RBP2.54□□□□□ -2
VPS35-207ENST00000568191 FASTKD1Q53R41 847 aaKnown RBP2.54□□□□□ -2
VPS35-207ENST00000568191 CYP4A22Q5TCH4 519 aa2.54□□□□□ -2
VPS35-207ENST00000568191 DOK6Q6PKX4 331 aa2.54□□□□□ -2
VPS35-207ENST00000568191 Q6ZSR9 355 aa2.54□□□□□ -2
VPS35-207ENST00000568191 LRRTM1Q86UE6 522 aa2.54□□□□□ -2
VPS35-207ENST00000568191 CEP97Q8IW35 865 aa2.54□□□□□ -2
VPS35-207ENST00000568191 MCEMP1Q8IX19 187 aa2.54□□□□□ -2
VPS35-207ENST00000568191 CRYBG2Q8N1P7 616 aa2.54□□□□□ -2
VPS35-207ENST00000568191 MARVELD2Q8N4S9 558 aa2.54□□□□□ -2
VPS35-207ENST00000568191 OR1J1Q8NGS3 322 aa2.54□□□□□ -2
VPS35-207ENST00000568191 DAZLQ92904 295 aaKnown RBP2.54□□□□□ -2
VPS35-207ENST00000568191 C18orf12Q96KH6 178 aa2.54□□□□□ -2
VPS35-207ENST00000568191 FAM81BQ96LP2 452 aa2.54□□□□□ -2
VPS35-207ENST00000568191 CLEC7AQ9BXN2 247 aa2.54□□□□□ -2
VPS35-207ENST00000568191 SLC26A6Q9BXS9 759 aa2.54□□□□□ -2
VPS35-207ENST00000568191 UNC45AQ9H3U1 944 aa2.54□□□□□ -2
VPS35-207ENST00000568191 MYH16Q9H6N6 1097 aa2.54□□□□□ -2
VPS35-207ENST00000568191 DNAJC18Q9H819 358 aa2.54□□□□□ -2
VPS35-207ENST00000568191 ACKR4Q9NPB9 350 aa2.54□□□□□ -2
VPS35-207ENST00000568191 SPIN1Q9Y657 262 aaPredicted RBP2.54□□□□□ -2
VPS35-207ENST00000568191 PIAS3Q9Y6X2 628 aa2.54□□□□□ -2
VPS35-207ENST00000568191 SEC23IPQ9Y6Y8 1000 aaKnown RBP2.54□□□□□ -2
VPS35-207ENST00000568191 GCNT3O95395 438 aa2.53□□□□□ -2
VPS35-207ENST00000568191 TPOP07202 933 aa2.53□□□□□ -2
VPS35-207ENST00000568191 SELLP14151 372 aa2.53□□□□□ -2
VPS35-207ENST00000568191 EFNA1P20827 205 aaPredicted RBP2.53□□□□□ -2
VPS35-207ENST00000568191 CA6P23280 308 aa2.53□□□□□ -2
VPS35-207ENST00000568191 MAPK4P31152 587 aa2.53□□□□□ -2
VPS35-207ENST00000568191 CAMPP49913 170 aa2.53□□□□□ -2
VPS35-207ENST00000568191 GSDMDP57764 484 aa2.53□□□□□ -2
VPS35-207ENST00000568191 SP3Q02447 781 aa2.53□□□□□ -2
VPS35-207ENST00000568191 RAPSNQ13702 412 aa2.53□□□□□ -2
VPS35-207ENST00000568191 ZNF239Q16600 458 aaKnown RBP2.53□□□□□ -2
VPS35-207ENST00000568191 HLA-BQ31612 363 aa2.53□□□□□ -2
VPS35-207ENST00000568191 LCE3CQ5T5A8 94 aa2.53□□□□□ -2
VPS35-207ENST00000568191 INTS11Q5TA45 600 aaKnown RBP2.53□□□□□ -2
VPS35-207ENST00000568191 GKAP1Q5VSY0 366 aaPredicted RBP2.53□□□□□ -2
VPS35-207ENST00000568191 KLHL35Q6PF15 583 aa2.53□□□□□ -2
VPS35-207ENST00000568191 MMS22LQ6ZRQ5 1243 aa2.53□□□□□ -2
VPS35-207ENST00000568191 TMTC3Q6ZXV5 915 aa2.53□□□□□ -2
VPS35-207ENST00000568191 PCYOX1LQ8NBM8 494 aa2.53□□□□□ -2
VPS35-207ENST00000568191 NAXEQ8NCW5 288 aa2.53□□□□□ -2
VPS35-207ENST00000568191 C1orf131Q8NDD1 294 aaKnown RBP2.53□□□□□ -2
VPS35-207ENST00000568191 ELMOD3Q96FG2 381 aa2.53□□□□□ -2
VPS35-207ENST00000568191 PGAM5Q96HS1 289 aa2.53□□□□□ -2
VPS35-207ENST00000568191 PRAC1Q96KF2 57 aa2.53□□□□□ -2
VPS35-207ENST00000568191 CMTM3Q96MX0 182 aa2.53□□□□□ -2
VPS35-207ENST00000568191 C7orf26Q96N11 449 aa2.53□□□□□ -2
VPS35-207ENST00000568191 OR2A14Q96R47 310 aa2.53□□□□□ -2
VPS35-207ENST00000568191 GAD1Q99259 594 aa2.53□□□□□ -2
VPS35-207ENST00000568191 KRT12Q99456 494 aa2.53□□□□□ -2
VPS35-207ENST00000568191 PIGQQ9BRB3 760 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 158.1 ms