RNA–Protein interactions for RNA: ENST00000568169.5

TCF4-238, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-238	ENST00000568169	VSIG1	Q86XK7	387 aa		11.06	□□□□□ -0.64
TCF4-238	ENST00000568169	SRRM1	Q8IYB3	904 aa	Known RBP	11.06	□□□□□ -0.64
TCF4-238	ENST00000568169	INPP5D	Q92835	1189 aa		11.06	□□□□□ -0.64
TCF4-238	ENST00000568169	IP6K3	Q96PC2	410 aa		11.06	□□□□□ -0.64
TCF4-238	ENST00000568169	DPH2	Q9BQC3	489 aa	Predicted RBP	11.06	□□□□□ -0.64
TCF4-238	ENST00000568169	DHRS4	Q9BTZ2	278 aa		11.06	□□□□□ -0.64
TCF4-238	ENST00000568169	SMOX	Q9NWM0	555 aa		11.06	□□□□□ -0.64
TCF4-238	ENST00000568169	UBP1	Q9NZI7	540 aa		11.06	□□□□□ -0.64
TCF4-238	ENST00000568169	HACD3	Q9P035	362 aa		11.06	□□□□□ -0.64
TCF4-238	ENST00000568169	SERTAD3	Q9UJW9	196 aa		11.06	□□□□□ -0.64
TCF4-238	ENST00000568169	NENF	Q9UMX5	172 aa		11.06	□□□□□ -0.64
TCF4-238	ENST00000568169	PADI2	Q9Y2J8	665 aa		11.06	□□□□□ -0.64
TCF4-238	ENST00000568169		A0A0A6YYK5	440 aa	Predicted RBP	11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	GLYATL1P3	A0A0U1RQE8	302 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	LRRD1	A4D1F6	860 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	C3orf70	A6NLC5	250 aa	Predicted RBP	11.05	□□□□□ -0.64
TCF4-238	ENST00000568169		C9J4A7	227 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	MATN2	O00339	956 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	APOL1	O14791	398 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	PPP1R12A	O14974	1030 aa	Predicted RBP	11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	ALPP	P05187	535 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	HLA-DPA1	P20036	260 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	POU3F2	P20265	443 aa	Predicted RBP	11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	ELAVL4	P26378	380 aa	Known RBP	11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	NDUFS1	P28331	727 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	OTX2	P32243	289 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	PREP	P48147	710 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	WNT3A	P56704	352 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	TYRO3	Q06418	890 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	PRKAA1	Q13131	559 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	ITGA9	Q13797	1035 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	ELOA	Q14241	798 aa	Known RBP	11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	SSPN	Q14714	243 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	NFKBIB	Q15653	356 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	KYNU	Q16719	465 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	SIRPB2	Q5JXA9	342 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	DCAF10	Q5QP82	559 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	ZFYVE27	Q5T4F4	411 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	LYPLAL1	Q5VWZ2	237 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	KDELC1	Q6UW63	502 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	NPNT	Q6UXI9	565 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	SPOCD1	Q6ZMY3	1216 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169		Q6ZS92	163 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	OR4E2	Q8NGC2	313 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	OR2L2	Q8NH16	312 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	RMDN2	Q96LZ7	410 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	TEKT5	Q96M29	485 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	FER1L6-AS2	Q96M78	137 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	BPIFA3	Q9BQP9	254 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	PITPNM3	Q9BZ71	974 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	NAT10	Q9H0A0	1025 aa	Known RBP	11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	ZNF552	Q9H707	407 aa	Predicted RBP	11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	CTTNBP2NL	Q9P2B4	639 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	UVRAG	Q9P2Y5	699 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	FAM153A	Q9UHL3	310 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	NTNG1	Q9Y2I2	539 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	COPG1	Q9Y678	874 aa	Known RBP	11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	COLEC10	Q9Y6Z7	277 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169	MED13L	Q71F56	2210 aa		11.05	□□□□□ -0.64
TCF4-238	ENST00000568169		A0A1W2PQJ5	194 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	SMTNL1	A8MU46	457 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169		F5H423	210 aa	Predicted RBP	11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	ZNF749	O43361	778 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	SGTA	O43765	313 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	KLHL41	O60662	606 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	IPO13	O94829	963 aa	Known RBP	11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	HBQ1	P09105	142 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	SLC35G4	P0C7Q5	338 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	ST6GAL1	P15907	406 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	MSH3	P20585	1137 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	AGXT	P21549	392 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	PTPN3	P26045	913 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	PRDX3	P30048	256 aa	Known RBP	11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	HNRNPH3	P31942	346 aa	Known RBP	11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	CD68	P34810	354 aa	Predicted RBP	11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	CHRNA4	P43681	627 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	SOX8	P57073	446 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	BCL7A	Q4VC05	210 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	B4GALNT4	Q76KP1	1039 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	DET1	Q7L5Y6	550 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	GALNT16	Q8N428	558 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	ACVR1C	Q8NER5	493 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	ZNF398	Q8TD17	642 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	UBE2Q2	Q8WVN8	375 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	LINC00615	Q96LM1	132 aa	Predicted RBP	11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	ILKAP	Q9H0C8	392 aa	Predicted RBP	11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	SRMS	Q9H3Y6	488 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	LCMT1	Q9UIC8	334 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	PCDHGA10	Q9Y5H3	936 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169	HEBP2	Q9Y5Z4	205 aa		11.04	□□□□□ -0.64
TCF4-238	ENST00000568169		E7EQ34	232 aa		11.03	□□□□□ -0.64
TCF4-238	ENST00000568169	BTN3A3	O00478	584 aa		11.03	□□□□□ -0.64
TCF4-238	ENST00000568169	HNRNPR	O43390	633 aa	Known RBP	11.03	□□□□□ -0.64
TCF4-238	ENST00000568169	LDB2	O43679	373 aa		11.03	□□□□□ -0.64
TCF4-238	ENST00000568169	BUD23	O43709	281 aa	Known RBP	11.03	□□□□□ -0.64
TCF4-238	ENST00000568169	IGHE	P01854	428 aa		11.03	□□□□□ -0.64
TCF4-238	ENST00000568169	POLB	P06746	335 aa		11.03	□□□□□ -0.64
TCF4-238	ENST00000568169	H2AFZ	P0C0S5	128 aa		11.03	□□□□□ -0.64
TCF4-238	ENST00000568169	PYGM	P11217	842 aa		11.03	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms