RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 C17orf113A0A1B0GUU1 675 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 RCCD1A6NED2 376 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 CPNE3O75131 537 aaKnown RBP16.67■□□□□ 0.26
CLN3-216ENST00000565316 RBP3P10745 1247 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 RALBP11234 206 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 CYLC1P35663 651 aaPredicted RBP16.67■□□□□ 0.26
CLN3-216ENST00000565316 CD97P48960 835 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 EIF3EP60228 445 aaKnown RBP16.67■□□□□ 0.26
CLN3-216ENST00000565316 PRPSAP1Q14558 356 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 GPR19Q15760 415 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 TMTC4Q5T4D3 741 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 ARMC6Q6NXE6 501 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 FAM199XQ6PEV8 388 aaPredicted RBP16.67■□□□□ 0.26
CLN3-216ENST00000565316 ASB18Q6ZVZ8 466 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 SNX20Q7Z614 316 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 THAP4Q8WY91 577 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 PPM1MQ96MI6 270 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 LRFN5Q96NI6 719 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 FEZ2Q9UHY8 353 aaPredicted RBP16.67■□□□□ 0.26
CLN3-216ENST00000565316 CRLS1Q9UJA2 301 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 POMT2Q9UKY4 750 aa16.67■□□□□ 0.26
CLN3-216ENST00000565316 UTP20O75691 2785 aaKnown RBP16.66■□□□□ 0.26
CLN3-216ENST00000565316 KCNN4O15554 427 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 LDB2O43679 373 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 SCRG1O75711 98 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 STK10O94804 968 aaKnown RBP16.66■□□□□ 0.26
CLN3-216ENST00000565316 POLBP06746 335 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 ATP1B2P14415 290 aaPredicted RBP16.66■□□□□ 0.26
CLN3-216ENST00000565316 ITGALP20701 1170 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 CTNNA2P26232 953 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 HADHAP40939 763 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 RPS15P62841 145 aaKnown RBP16.66■□□□□ 0.26
CLN3-216ENST00000565316 GPR33Q49SQ1 333 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 DARS2Q6PI48 645 aaKnown RBP16.66■□□□□ 0.26
CLN3-216ENST00000565316 SYVN1Q86TM6 617 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 SLC38A9Q8NBW4 561 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 ACVR1CQ8NER5 493 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 CCDC110Q8TBZ0 833 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 COPS8Q99627 209 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 TBL1YQ9BQ87 522 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 TRIM55Q9BYV6 548 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 TRIM5Q9C035 493 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 OR52A5Q9H2C5 316 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 C1GALT1Q9NS00 363 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 ANKMY1Q9P2S6 941 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 FAM8A1Q9UBU6 413 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 PLAAQ9Y263 795 aa16.66■□□□□ 0.26
CLN3-216ENST00000565316 FARSAQ9Y285 508 aaKnown RBP16.66■□□□□ 0.26
CLN3-216ENST00000565316 EPN1Q9Y6I3 576 aaPredicted RBP16.66■□□□□ 0.26
CLN3-216ENST00000565316 TRBV5-4A0A0C4DH59 114 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 CCDC66A2RUB6 948 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 BTNL10A8MVZ5 291 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 CFAP99D6REC4 459 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 MATN2O00339 956 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 ZNF189O75820 626 aaPredicted RBP16.65■□□□□ 0.26
CLN3-216ENST00000565316 PDGFAP04085 211 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 MSL3P1P0C860 447 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 POLR2CP19387 275 aaPredicted RBP16.65■□□□□ 0.26
CLN3-216ENST00000565316 ARCN1P48444 511 aaKnown RBP16.65■□□□□ 0.26
CLN3-216ENST00000565316 RWDD2BP57060 319 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 RPS18P62269 152 aaKnown RBP16.65■□□□□ 0.26
CLN3-216ENST00000565316 GPS2Q13227 327 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 GSE1Q14687 1217 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 IZUMO3Q5VZ72 239 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 TMEM126BQ8IUX1 230 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 TEX19Q8NA77 164 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 OR4E2Q8NGC2 313 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 ALG3Q92685 438 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 PANX2Q96RD6 677 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 FAM118BQ9BPY3 351 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 FAM96AQ9H5X1 160 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 COG4Q9H9E3 785 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 SYTL2Q9HCH5 934 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 ZDHHC3Q9NYG2 299 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 DUSP10Q9Y6W6 482 aa16.65■□□□□ 0.26
CLN3-216ENST00000565316 RP1L1Q8IWN7 2480 aaPredicted RBP16.65■□□□□ 0.26
CLN3-216ENST00000565316 SPTAN1Q13813 2472 aaKnown RBP16.64■□□□□ 0.25
CLN3-216ENST00000565316 MACROD2A1Z1Q3 448 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 SLC9B1P1A6NJY1 282 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 H7C0S8 307 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 DNAJB5O75953 348 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 TJP3O95049 919 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 RAB40ALP0C0E4 278 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 CD151P48509 253 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 GSDMDP57764 484 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 TMPRSS15P98073 1019 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 IL10RAQ13651 578 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 SPARCL1Q14515 664 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 KRT33BQ14525 404 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 PLEKHS1Q5SXH7 462 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 KCTD11Q693B1 232 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 FBXO38Q6PIJ6 1188 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 LRRC57Q8N9N7 239 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 LCN9Q8WX39 176 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 MR1Q95460 341 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 PITPNM3Q9BZ71 974 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 CHST8Q9H2A9 424 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 SRMSQ9H3Y6 488 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 TFB2MQ9H5Q4 396 aaKnown RBP16.64■□□□□ 0.25
CLN3-216ENST00000565316 MLXIPLQ9NP71 852 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms