RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.38□□□□□ -1.23
VPS39-204ENST00000561818 TDHQ8IZJ6 230 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 FBXW8Q8N3Y1 598 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 KIF2BQ8N4N8 673 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 GIMAP7Q8NHV1 300 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 FAM174AQ8TBP5 190 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 METTL6Q8TCB7 284 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 HM13Q8TCT9 377 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 TRPC4APQ8TEL6 797 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 ELMO1Q92556 727 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 EXT2Q93063 718 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 RHBDF1Q96CC6 855 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 FBXL8Q96CD0 374 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 EID2BQ96D98 161 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 ASB9Q96DX5 294 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 RSRC1Q96IZ7 334 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 COQ10AQ96MF6 247 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 ZSWIM3Q96MP5 696 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 LENG8Q96PV6 779 aaPredicted RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 GDF15Q99988 308 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 THTPAQ9BU02 230 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 RAB11FIP5Q9BXF6 653 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 BRINP2Q9C0B6 783 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 RSPH9Q9H1X1 276 aaPredicted RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 NKX2-4Q9H2Z4 354 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 EBF3Q9H4W6 596 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 TRIM39Q9HCM9 518 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 PREBQ9HCU5 417 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 HEBP1Q9NRV9 189 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 C6orf203Q9P0P8 240 aaPredicted RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 ADGRE2Q9UHX3 823 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 CDH22Q9UJ99 828 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 LEF1Q9UJU2 399 aaPredicted RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 SARDHQ9UL12 918 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 FZD4Q9ULV1 537 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 FNDC3AQ9Y2H6 1198 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 YBX2Q9Y2T7 364 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 COPG1Q9Y678 874 aaKnown RBP7.38□□□□□ -1.23
VPS39-204ENST00000561818 SCN8AQ9UQD0 1980 aa7.38□□□□□ -1.23
VPS39-204ENST00000561818 BRCA2P51587 3418 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 NEMP2A6NFY4 417 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 H3BM21 787 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 CDC7O00311 574 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 SCAMP3O14828 347 aaKnown RBP7.37□□□□□ -1.23
VPS39-204ENST00000561818 CLGNO14967 610 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 PIP5K1BO14986 540 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 CFLARO15519 480 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 NRP2O60462 931 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 PSIP1O75475 530 aaKnown RBP7.37□□□□□ -1.23
VPS39-204ENST00000561818 SKAP2O75563 359 aaPredicted RBP7.37□□□□□ -1.23
VPS39-204ENST00000561818 IL6P05231 212 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 EPHX1P07099 455 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 PRR35P0CG20 571 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 PRPS2P11908 318 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 POU3F3P20264 500 aaPredicted RBP7.37□□□□□ -1.23
VPS39-204ENST00000561818 KCNA5P22460 613 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 ME2P23368 584 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 PRPH2P23942 346 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 FCARP24071 287 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 ARRB2P32121 409 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 GJA4P35212 333 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 CPOXP36551 454 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 HSPA13P48723 471 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 HNRNPFP52597 415 aaKnown RBP7.37□□□□□ -1.23
VPS39-204ENST00000561818 RPS21P63220 83 aaKnown RBP7.37□□□□□ -1.23
VPS39-204ENST00000561818 MRPS21P82921 87 aaKnown RBP7.37□□□□□ -1.23
VPS39-204ENST00000561818 CTBSQ01459 385 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 SF3A3Q12874 501 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS39-204ENST00000561818 RALGDSQ12967 914 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 ADAM15Q13444 863 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 BOP1Q14137 746 aaKnown RBP7.37□□□□□ -1.23
VPS39-204ENST00000561818 RCAN2Q14206 197 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 PTK2BQ14289 1009 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 PTPRCAPQ14761 206 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 CBX2Q14781 532 aaPredicted RBP7.37□□□□□ -1.23
VPS39-204ENST00000561818 UGT3A2Q3SY77 523 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 MTX3Q5HYI7 312 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 C9orf50Q5SZB4 431 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 FAM182AQ5T1J6 154 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 TMEM215Q68D42 235 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 VITQ6UXI7 678 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 USP30Q70CQ3 517 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 FKBP9P1Q75LS8 142 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 TRIM46Q7Z4K8 759 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 GOLGA7Q7Z5G4 137 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 ADGRD2Q7Z7M1 963 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 TSPAN33Q86UF1 283 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 SNX32Q86XE0 403 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 ZSWIM9Q86XI8 627 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 TREML1Q86YW5 311 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 SLC22A15Q8IZD6 547 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 PHTF2Q8N3S3 785 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 SPATA6LQ8N4H0 392 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 NATD1Q8N6N6 113 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 NAT16Q8N8M0 369 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 CHST14Q8NCH0 376 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 DENND6BQ8NEG7 585 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 OR2T3Q8NH03 318 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 AGR3Q8TD06 166 aa7.37□□□□□ -1.23
VPS39-204ENST00000561818 GDPD5Q8WTR4 605 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms