RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ESR1P03372 595 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 STMN1P16949 149 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 SAT1P21673 171 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 CRABP2P29373 138 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 ETV3P41162 512 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 GPR1P46091 355 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 KPNA2P52292 529 aaKnown RBP11.6□□□□□ -0.55
LDLR-212ENST00000560467 LIMK2P53671 638 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 MAGOHP61326 146 aaKnown RBP11.6□□□□□ -0.55
LDLR-212ENST00000560467 POU4F1Q01851 419 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 KCNC4Q03721 635 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 SRSF6Q13247 344 aaKnown RBP11.6□□□□□ -0.55
LDLR-212ENST00000560467 GTF2H3Q13889 308 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 EFTUD2Q15029 972 aaKnown RBP eCLIP11.6□□□□□ -0.551e-6■■■■□ 20.5
LDLR-212ENST00000560467 PTPRRQ15256 657 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 CHRNA6Q15825 494 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 LDLRAP1Q5SW96 308 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 C6orf132Q5T0Z8 1188 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 KCTD16Q68DU8 428 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 PTRHD1Q6GMV3 140 aaKnown RBP11.6□□□□□ -0.55
LDLR-212ENST00000560467 SRRM1Q8IYB3 904 aaKnown RBP11.6□□□□□ -0.55
LDLR-212ENST00000560467 KRT222Q8N1A0 295 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 ARL14Q8N4G2 192 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 EXD3Q8N9H8 876 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 KYQ8NBH2 561 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 DENND6BQ8NEG7 585 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 ACMSDQ8TDX5 336 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 NAT6Q93015 286 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 VOPP1Q96AW1 172 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 CCDC97Q96F63 343 aaPredicted RBP11.6□□□□□ -0.55
LDLR-212ENST00000560467 ELMO2Q96JJ3 720 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 RIOK2Q9BVS4 552 aaKnown RBP11.6□□□□□ -0.55
LDLR-212ENST00000560467 FAM96AQ9H5X1 160 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 PLAC1Q9HBJ0 212 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 KCNK9Q9NPC2 374 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 FBXO6Q9NRD1 293 aaPredicted RBP11.6□□□□□ -0.55
LDLR-212ENST00000560467 NKIRAS1Q9NYS0 192 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 SIRPGQ9P1W8 387 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 NFKBIL1Q9UBC1 381 aaPredicted RBP11.6□□□□□ -0.55
LDLR-212ENST00000560467 SLC39A10Q9ULF5 831 aa11.6□□□□□ -0.55
LDLR-212ENST00000560467 OR51F1A6NGY5 319 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 E5RI56 91 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 YY2O15391 372 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 VPS26AO75436 327 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 PIAS1O75925 651 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 HAUS5O94927 633 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 SLC25A14O95258 325 aaPredicted RBP11.59□□□□□ -0.55
LDLR-212ENST00000560467 WISP1O95388 367 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 S1PR4O95977 384 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 ANXA6P08133 673 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 OR56A5P0C7T3 313 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 HGFP14210 728 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 MSH3P20585 1137 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 ARNTP27540 789 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 SKIV2L2P42285 1042 aaKnown RBP11.59□□□□□ -0.55
LDLR-212ENST00000560467 NSG1P42857 185 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 RPIAP49247 311 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 THOP1P52888 689 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 DPTQ07507 201 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 RALGDSQ12967 914 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 NFATC3Q12968 1075 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 SPIDRQ14159 915 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 ITIH4Q14624 930 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 LRRC14Q15048 493 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 UBAP2Q5T6F2 1119 aaKnown RBP11.59□□□□□ -0.55
LDLR-212ENST00000560467 RAET1GQ6H3X3 334 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 FAM45BPQ6NSW5 357 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 KLC3Q6P597 504 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 TIFABQ6ZNK6 161 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 TECPR1Q7Z6L1 1165 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 ZC3HC1Q86WB0 502 aaKnown RBP11.59□□□□□ -0.55
LDLR-212ENST00000560467 SERPINA9Q86WD7 417 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 DENND6AQ8IWF6 608 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 NXPE1Q8N323 547 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 GPR26Q8NDV2 337 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 FAM76AQ8TAV0 307 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 FAM45AQ8TCE6 357 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 BTN2A2Q8WVV5 523 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 CENPTQ96BT3 561 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 ZBTB9Q96C00 473 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 DTD2Q96FN9 168 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 COQ10AQ96MF6 247 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 CCNL2Q96S94 520 aaPredicted RBP11.59□□□□□ -0.55
LDLR-212ENST00000560467 SLC13A1Q9BZW2 595 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 CNOT10Q9H9A5 744 aaKnown RBP11.59□□□□□ -0.55
LDLR-212ENST00000560467 MBNL1Q9NR56 388 aaKnown RBP11.59□□□□□ -0.55
LDLR-212ENST00000560467 SMYD2Q9NRG4 433 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 ZDHHC3Q9NYG2 299 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 TAS2R13Q9NYV9 303 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 OGFRQ9NZT2 677 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 GULP1Q9UBP9 304 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 DCDC2Q9UHG0 476 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 CD84Q9UIB8 345 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 GNPTGQ9UJJ9 305 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 ATXN7L1Q9ULK2 861 aaPredicted RBP11.59□□□□□ -0.55
LDLR-212ENST00000560467 PADI4Q9UM07 663 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 CRYL1Q9Y2S2 319 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 VWA7Q9Y334 891 aa11.59□□□□□ -0.55
LDLR-212ENST00000560467 TDRD6O60522 2096 aaKnown RBP11.59□□□□□ -0.55
LDLR-212ENST00000560467 COL27A1Q8IZC6 1860 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms