RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NSMCE3Q96MG7 304 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 PITPNM3Q9BZ71 974 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 PDCL3Q9H2J4 239 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 KAT14Q9H8E8 782 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 ACKR4Q9NPB9 350 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 WASH6PQ9NQA3 447 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 MAN1B1Q9UKM7 699 aa3.81□□□□□ -1.8
VPS13C-208ENST00000559119 OGG1O15527 345 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 KHDRBS3O75525 346 aaKnown RBP3.8□□□□□ -1.8
VPS13C-208ENST00000559119 CLDN1O95832 211 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 EFNA1P20827 205 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-208ENST00000559119 ACADLP28330 430 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 GSDMDP57764 484 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 NIPAL4Q0D2K0 466 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 SLC25A30Q5SVS4 291 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 FAM109BQ6ICB4 259 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-208ENST00000559119 ZNF343Q6P1L6 599 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 GPRIN3Q6ZVF9 776 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 GALNT5Q7Z7M9 940 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 PIGZQ86VD9 579 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 Q8N377 158 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 DYRK2Q92630 601 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 ZKSCAN4Q969J2 545 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-208ENST00000559119 SGK494Q96LW2 274 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 ZNF582Q96NG8 517 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-208ENST00000559119 WDFY2Q96P53 400 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 USP28Q96RU2 1077 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 KRT12Q99456 494 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 RAB11FIP5Q9BXF6 653 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 DGCR6LQ9BY27 220 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 WDR37Q9Y2I8 494 aa3.8□□□□□ -1.8
VPS13C-208ENST00000559119 SPIN1Q9Y657 262 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-208ENST00000559119 FAM237BA0A1B0GVD1 139 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 PLEKHD1A6NEE1 506 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 PRKRAO75569 313 aaKnown RBP3.79□□□□□ -1.8
VPS13C-208ENST00000559119 ZSCAN5DPP0CG00 497 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 ACADMP11310 421 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 PGFP49763 221 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 TUBP50607 506 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 HUNKP57058 714 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 COX10Q12887 443 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 PLA2G7Q13093 441 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 GCNT6Q5T4J0 391 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 ACSM2BQ68CK6 577 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 GLDNQ6ZMI3 551 aaPredicted RBP3.79□□□□□ -1.8
VPS13C-208ENST00000559119 HEATR4Q86WZ0 1026 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 DCLK2Q8N568 766 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 FRMD1Q8N878 549 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 OR4C3Q8NH37 302 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 ZFAND2BQ8WV99 257 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 RASL10AQ92737 203 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 ZUFSPQ96AP4 578 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 TRIM6Q9C030 488 aaPredicted RBP3.79□□□□□ -1.8
VPS13C-208ENST00000559119 SLA2Q9H6Q3 261 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 TAB2Q9NYJ8 693 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 NUDT4Q9NZJ9 180 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 RIPK3Q9Y572 518 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 ZNF318Q5VUA4 2279 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 MYH15Q9Y2K3 1946 aa3.79□□□□□ -1.8
VPS13C-208ENST00000559119 A0A1W2PPH5 198 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 ELOVL7A1L3X0 281 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 PYGLP06737 847 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 ACTN1P12814 892 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 TMEM11P17152 192 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 BSGP35613 385 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 PPM1FP49593 454 aaPredicted RBP3.78□□□□□ -1.8
VPS13C-208ENST00000559119 PRKCZQ05513 592 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 ZSCAN23Q3MJ62 389 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 FIP1L1Q6UN15 594 aaKnown RBP3.78□□□□□ -1.8
VPS13C-208ENST00000559119 R3HCC1LQ7Z5L2 792 aaKnown RBP3.78□□□□□ -1.8
VPS13C-208ENST00000559119 ARHGAP12Q8IWW6 846 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 NIPA2Q8N8Q9 360 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 OR5AP2Q8NGF4 316 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 ETNPPLQ8TBG4 499 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 SOSTQ9BQB4 213 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 AGXT2Q9BYV1 514 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 WWTR1Q9GZV5 400 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 EPHA6Q9UF33 1036 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 RARRES3Q9UL19 164 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 KCNE2Q9Y6J6 123 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 NOTCH2Q04721 2471 aa3.78□□□□□ -1.8
VPS13C-208ENST00000559119 IGLV3-10A0A075B6K4 115 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 LOC101059948A0A1B0GTJ6 334 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 A0A1W2PN81 502 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 HMGB1P09429 215 aaKnown RBP3.77□□□□□ -1.81
VPS13C-208ENST00000559119 CHRNA7P36544 502 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 ADIPOR2Q86V24 386 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 HOGA1Q86XE5 327 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 ZNF354CQ86Y25 554 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 LACC1Q8IV20 430 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 SLC39A11Q8N1S5 342 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 MARVELD2Q8N4S9 558 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 TSPYL6Q8N831 410 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 HJURPQ8NCD3 748 aaPredicted RBP3.77□□□□□ -1.81
VPS13C-208ENST00000559119 ARHGAP45Q92619 1136 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 GTF3AQ92664 365 aaKnown RBP3.77□□□□□ -1.81
VPS13C-208ENST00000559119 MOAP1Q96BY2 351 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 RRP36Q96EU6 259 aaKnown RBP3.77□□□□□ -1.81
VPS13C-208ENST00000559119 DDOQ99489 341 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 HGH1Q9BTY7 390 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms